PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g022558m

Common Name

CISIN_1g022516mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

WOX

Protein Properties

Length: 296aa MW: 32504.8 Da PI: 6.0364

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g022558m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.5	7.3e-21	104	164	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + + +ps+++++e++ +l +++e++V++WFqNrRa+ k+ orange1.1g022558m 104 RQRWTPTPVQLQILESIFDQgTGTPSKQKIKEITVELsqhgQISETNVYNWFQNRRARSKR 164 89***************99************************************97 PP
2	Wus_type_Homeobox	103.8	1.1e-33	103	166	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G+ tP+k++i++it eL+++G+i+++NV++WFQNr+aR+++kq orange1.1g022558m 103 ARQRWTPTPVQLQILESIFDQGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 166 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.1E-17	98	167	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.479	100	165	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-18	102	166	IPR009057	Homeodomain-like
SMART	SM00389	1.3E-14	102	169	IPR001356	Homeobox domain
CDD	cd00086	4.24E-14	104	166	No hit	No description
Pfam	PF00046	1.2E-18	104	164	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MEWDNIREAA QQETQTQNQN QNQRGGENDN NNVVNGVMYV KVMTDEQLET LRKQIAVYAT 60 ICEQLVEMHK SLSAHQDLAA AGRLGNIYCD PLMTSGGGHK ISARQRWTPT PVQLQILESI 120 FDQGTGTPSK QKIKEITVEL SQHGQISETN VYNWFQNRRA RSKRKQLVSS SANTLHNGGG 180 GGAGAGAGGA DSEVETEVDS LLLHDEHKTT KPENLSSAHS TSQPQHLRNL PPTPRPRDDD 240 DPMCFHTPAD ISSSQLHFLG VFSNNPRDDH LTGKMGGMPG SYNLYDHAED YSMAG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	157	165	RRARSKRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.5405	0.0	flower\| fruit\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00617	PBM	Transfer from AT4G35550	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024953678.1	0.0	WUSCHEL-related homeobox 13 isoform X1
Swissprot	O81788	1e-91	WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBL	A0A067G7G2	0.0	A0A067G7G2_CITSI; Uncharacterized protein
STRING	XP_006467087.1	0.0	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	6e-88	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	orange1.1g022558m

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605]