PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g022499m
Common NameCISIN_1g019485mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 297aa    MW: 33434.4 Da    PI: 6.9561
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g022499mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH53.83.5e-174593254
                       HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       r +h+e E+rRR++iN++f+ Lr+l+P++    ++K +Ka+ L +++eYI+ L
  orange1.1g022499m 45 RSKHSETEQRRRSKINERFQMLRDLIPQN----DQKRDKASFLLEVIEYIQFL 93
                       899*************************9....9*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.102.0E-2341115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.184393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-1943120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.77E-174598No hitNo description
PfamPF000101.3E-144593IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-134999IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MVKSSNNHLE EDEEADLYDK HVNRNNSSSY KGEGKSSEQK ATTHRSKHSE TEQRRRSKIN  60
ERFQMLRDLI PQNDQKRDKA SFLLEVIEYI QFLREKLQMY EGPYQGWTQE PTKLTPWRSH  120
NGPAETYMDQ SQVIKNGSGH ENNVINPGML PNPQNSMESD LDTAAAYKAT DFSPGSATTM  180
VPQNMHAQQN MFAPVGRGGM PTQPLQESVS DVENMVYQPQ TQLWQGRSCA TECAVPNGAL  240
NDQDLMIESG SSSMSNAYSQ GPASRCKLML AKGLMMGQLP WHLAQRIMTR TIRTTK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00534DAPTransfer from AT5G38860Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024955479.10.0transcription factor BIM2 isoform X2
TrEMBLA0A067FY430.0A0A067FY43_CITSI; Uncharacterized protein
STRINGXP_006430966.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38860.13e-46BES1-interacting Myc-like protein 3