PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g022439m | ||||||||
Common Name | CISIN_1g022439mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB | ||||||||
Protein Properties | Length: 298aa MW: 31647 Da PI: 7.8901 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.1 | 1.3e-10 | 11 | 55 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 WT+e d+ + +a ++ + +W++Ia+ ++ g++l+++k ++ orange1.1g022439m 11 VWTKEQDKAFENALVSYPEDasdRWEKIAADVP-GKSLEEIKQHYE 55 7********************************.**********95 PP | |||||||
2 | Myb_DNA-binding | 42 | 2.2e-13 | 123 | 167 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT++E+ l++ + ++G+g+W++I+r + +Rt+ q+ s+ qky orange1.1g022439m 123 AWTEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKY 167 6*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 8.903 | 7 | 62 | IPR017884 | SANT domain |
SMART | SM00717 | 6.6E-9 | 8 | 60 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.38E-11 | 10 | 66 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.9E-8 | 11 | 55 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-4 | 11 | 58 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.28E-9 | 12 | 58 | No hit | No description |
PROSITE profile | PS51294 | 17.581 | 115 | 172 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.27E-16 | 118 | 173 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.6E-17 | 120 | 170 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.2E-10 | 120 | 170 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-10 | 123 | 166 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.54E-10 | 123 | 168 | No hit | No description |
Pfam | PF00249 | 2.7E-11 | 123 | 167 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MTVDEVGSSS VWTKEQDKAF ENALVSYPED ASDRWEKIAA DVPGKSLEEI KQHYELLVDD 60 VNRIESGCVP LPSYNSSSDG SMSHAGDEGT SNGKKGGHYG HFNSESNGNK SSRSDQERRK 120 GIAWTEDEHR LFLLGLDKYG KGDWRSISRN FVVTRTPTQV ASHAQKYFIR LNSMNKDRRR 180 SSIHDITSVN NGDISAPQGP ITGQTNGSGG GGSSGKSSKQ PPQHSAGPPG VGMYGAPTMG 240 QPIGGPLVSA VGTPVNLPAP AHMAYGVRAP VPGTVVPGAP MNVSPMPYPM PHASAHR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 7e-18 | 7 | 77 | 6 | 76 | RADIALIS |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.10512 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00500 | DAP | Transfer from AT5G08520 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006437648.1 | 0.0 | transcription factor SRM1 | ||||
Refseq | XP_006437649.1 | 0.0 | transcription factor SRM1 | ||||
Refseq | XP_006484484.1 | 0.0 | transcription factor SRM1 | ||||
Refseq | XP_015387550.1 | 0.0 | transcription factor SRM1 | ||||
Refseq | XP_015387551.1 | 0.0 | transcription factor SRM1 | ||||
Refseq | XP_024041573.1 | 0.0 | transcription factor SRM1 | ||||
Refseq | XP_024041574.1 | 0.0 | transcription factor SRM1 | ||||
Refseq | XP_024041575.1 | 0.0 | transcription factor SRM1 | ||||
Refseq | XP_024041576.1 | 0.0 | transcription factor SRM1 | ||||
Refseq | XP_024956475.1 | 0.0 | transcription factor SRM1 | ||||
Swissprot | Q9FNN6 | 1e-134 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | A0A067G2J5 | 0.0 | A0A067G2J5_CITSI; Uncharacterized protein | ||||
STRING | XP_006484484.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006437648.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3556 | 28 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 1e-123 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g022439m |
Publications ? help Back to Top | |||
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