PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g022395m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 299aa    MW: 32265.3 Da    PI: 4.3839
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g022395mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.9e-05273295223
                        EETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                        +C+ C+k+F++   L++H +  H
  orange1.1g022395m 273 SCSSCSKTFNSENALQSHTKAkH 295
                        6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.96E-5267294No hitNo description
PROSITE profilePS5015711.323272298IPR007087Zinc finger, C2H2
PROSITE patternPS000280274295IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005618Cellular Componentcell wall
GO:0005730Cellular Componentnucleolus
GO:0005739Cellular Componentmitochondrion
GO:0005774Cellular Componentvacuolar membrane
GO:0005829Cellular Componentcytosol
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEFWGVEVKA GQPLKVKPNF DNIIHLSQAS LGESKKEKGH DSVPLFVKFG DKKLVLGTLI  60
PENIPQLSFD LVFEKEFELS HNWKNGSIYF CGYQTPLPMD SSDEFDMGDS DEEEQEELPS  120
ITAVAENGKA GQKAEKAKVA TPKANLAAKP AKPIKDVKPE EDGDDESDDS DDEMVDGDDS  180
DAISGEDDSD DDDEDDSEDD EDSDEDEETP KKPEVGKKRP TESATKTPAP AKKAKTPMSD  240
GKKGVHVATP HPSKGVKTPN AKAQTPKSGG QVSCSSCSKT FNSENALQSH TKAKHSAK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.63970.0seed| stem
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006484979.10.0histone deacetylase HDT1-like isoform X1
RefseqXP_006484980.10.0histone deacetylase HDT1-like isoform X2
SwissprotQ8LJS22e-69HDT1_SOYBN; Histone deacetylase HDT1
TrEMBLV4UE571e-174V4UE57_9ROSI; Uncharacterized protein
STRINGXP_006484980.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20272667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.26e-38histone deacetylase 3