PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g022379m | ||||||||
Common Name | CISIN_1g022379mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bZIP | ||||||||
Protein Properties | Length: 299aa MW: 33485.4 Da PI: 4.4432 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 28.5 | 3.3e-09 | 137 | 178 | 4 | 45 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 +k+ rr +NR AA rsR+RKk++++ Le k+ Le+e ++L orange1.1g022379m 137 SKKRRRQLRNRDAAVRSRERKKMYVKDLEMKSRYLESECRKL 178 6999**********************************8877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.3E-11 | 132 | 196 | No hit | No description |
SMART | SM00338 | 1.1E-6 | 133 | 198 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.036 | 136 | 193 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.4E-8 | 138 | 180 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.13E-10 | 138 | 194 | No hit | No description |
CDD | cd14704 | 7.82E-15 | 139 | 190 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 141 | 156 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0030968 | Biological Process | endoplasmic reticulum unfolded protein response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence Send to blast |
MADDEFLEDE FDWNNLLTEL TDPSTAEIFS NPSPDGSVSP WIGDIESMLM NDNDDNSELE 60 PNQQSLDDFF ADVFVDQPSP ASGAEVIELP TDKDQNGADE SGNASPAEEN VLDEPEVNNS 120 DKNYNDTDND NADDPISKKR RRQLRNRDAA VRSRERKKMY VKDLEMKSRY LESECRKLGR 180 LLHCVLAENQ SLRFSLQKGN AYGASLTKQE SAVLLLESLL LGSLLWFLGI MCLFTLPKPI 240 WSHLESVPLV QVEEKAPGNL VQREAGSKNY LLAVVKSRRC KASRRKMKMT SHALSVLA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 138 | 157 | KRRRQLRNRDAAVRSRERKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.1782 | 0.0 | callus| fruit| seed |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00019 | PBM | Transfer from AT1G42990 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006435475.1 | 0.0 | bZIP transcription factor 60 | ||||
TrEMBL | A0A067HBZ6 | 0.0 | A0A067HBZ6_CITSI; Uncharacterized protein | ||||
STRING | XP_006435475.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4634 | 28 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G42990.1 | 6e-38 | basic region/leucine zipper motif 60 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g022379m |