PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g022288m
Common NameCISIN_1g022288mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 300aa    MW: 32990.8 Da    PI: 6.5316
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g022288mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.81.1e-091867154
                       CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       r++ +  rE+ RRdr+N+ f eL   l ++     +K++Ka+iL  +v+ +k+L
  orange1.1g022288m 18 RKMQKADREKLRRDRLNEHFTELGNALDPD----RPKNDKATILADTVQLLKDL 67
                       6778899********************997....79***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.4E-131790IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-131786IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.0651767IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-71867IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.42E-81872No hitNo description
SMARTSM003531.4E-72373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MFCSQKNEGE VKDCAATRKM QKADREKLRR DRLNEHFTEL GNALDPDRPK NDKATILADT  60
VQLLKDLTSQ VEKLKTEHAA LTEESRELTQ EKNDLREEKL SLRSEIENLN IQYQQRVRAM  120
VPWAAMDHSV MMAPPSYPYP VPMPMPPGAI PMHPPMQPYP MFGNQNPGVI PNPCSTFVPY  180
MAPNTLVEQQ SAQYASAVAQ PSGRSQGSAK EDSGNKSSGE SKIEKNEDSN DVTTDLELKT  240
PGSTTDQDLP SGQRKSKKSL RKENSFTNGS SSSRCSSSRS VQDSSSNSVA GGRKADDLG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.16111e-158fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006487406.10.0transcription factor bHLH121
RefseqXP_015388486.10.0transcription factor bHLH121
SwissprotQ9LT231e-101BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A067D7R40.0A0A067D7R4_CITSI; Uncharacterized protein
STRINGXP_006487406.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23532762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.28e-86bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]