PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g022056m | ||||||||
Common Name | CISIN_1g022056mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | TALE | ||||||||
Protein Properties | Length: 304aa MW: 33974.1 Da PI: 6.6305 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.5 | 9.3e-08 | 252 | 285 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp+++++++L +++gL+ +q+ +WF N+R + orange1.1g022056m 252 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 285 469*****************************87 PP | |||||||
2 | ELK | 25.4 | 3.2e-09 | 206 | 227 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK +L++++++++ ++++E++ orange1.1g022056m 206 ELKIELKQGFKSRIEDVREEIL 227 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 3.7E-20 | 34 | 78 | IPR005540 | KNOX1 |
Pfam | PF03790 | 3.0E-18 | 36 | 77 | IPR005540 | KNOX1 |
SMART | SM01256 | 1.1E-23 | 95 | 150 | IPR005541 | KNOX2 |
Pfam | PF03791 | 7.4E-16 | 98 | 149 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.132 | 206 | 226 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.71 | 226 | 289 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.6E-11 | 228 | 293 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.68E-16 | 228 | 293 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.85E-11 | 229 | 290 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-25 | 233 | 291 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.0E-17 | 246 | 285 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010192 | Biological Process | mucilage biosynthetic process | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MQEPSLGVMG SSSSGGGGGG GDVSGHHDQT ATVQLIKAEI ASHPLYEQLL AAHVSCLRVA 60 TPIDQLPLID AQLAQSHHVL RSYGSLQQAN NNNNHSLSPH ERQELDNFLA QYLIVLCTFK 120 EQLQQHVRVH AVEAVMGCRE IENTLQALTG VSLGEGTGAT MSDDEDDLHM DFSLDQSASD 180 SHDLMGFGPL LPTETERSLM ERVRQELKIE LKQGFKSRIE DVREEILRKR RAGKLPGDTT 240 SVLKNWWQQH SKWPYPTEDD KAKLVEETGL QLKQINNWFI NQRKRNWHSN SQSVTSLKSK 300 RKR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 1e-12 | 229 | 285 | 8 | 64 | Homeobox protein PKNOX1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 282 | 302 | RKRNWHSNSQSVTSLKSKRKR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.2099 | 0.0 | fruit| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006440504.1 | 0.0 | homeobox protein HD1 | ||||
Swissprot | Q9FPQ8 | 1e-164 | KNAT7_ARATH; Homeobox protein knotted-1-like 7 | ||||
TrEMBL | A0A067FJK5 | 0.0 | A0A067FJK5_CITSI; Uncharacterized protein | ||||
TrEMBL | V4VLU8 | 0.0 | V4VLU8_9ROSI; Uncharacterized protein | ||||
STRING | XP_006477358.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006440502.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM444 | 28 | 158 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62990.1 | 1e-162 | KNOTTED-like homeobox of Arabidopsis thaliana 7 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g022056m |
Publications ? help Back to Top | |||
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