PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g021987m
Common NameCISIN_1g014660mg, LOC102607505
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 305aa    MW: 31903.7 Da    PI: 10.0996
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g021987mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_127.47.6e-09278302125
                        XXXXCHHHCHHHHHHHHHHHHHHHH CS
             bZIP_1   1 ekelkrerrkqkNReAArrsRqRKk 25 
                        e+elkrerrkq+NRe+ArrsR+RK+
  orange1.1g021987m 278 ERELKRERRKQSNRESARRSRLRKQ 302
                        89**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077771.8E-34194IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165963.4E-24127259No hitNo description
Gene3DG3DSA:1.20.5.1702.0E-7272303No hitNo description
CDDcd147022.12E-11283302No hitNo description
PROSITE patternPS000360285300IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGNNEDGKSF KSEKPSSPPP SDQGNIHMYT DWAAMQAYYG PRVAIPPYYN SPIASGHAPQ  60
PYMWGPAQPM MPPYGAPYAA IYSTGGVYAH PAVPLGSHAH NHGVPTSPAA VTPLNTEAPT  120
KSSGNADRGL AKKLKGLDGL AMSIGNASAE SAEGGAEQRP SQSEADGSTD GSDGNTVRAG  180
QSRKKRSREG TPIAGGDGKT DIQSTPVPVG VNATPDKVLA TAVAPTSVSG KPVGPVLSPG  240
MPTKLELRNA PGMNVKASPT SVPQPCAVLP PETWIQNERE LKRERRKQSN RESARRSRLR  300
KQVK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294300RRSRLRK
2294301RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.116381e-140callus| fruit
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006444899.10.0common plant regulatory factor 1 isoform X1
RefseqXP_006491223.10.0common plant regulatory factor 1 isoform X1
RefseqXP_006491224.10.0common plant regulatory factor 1 isoform X1
SwissprotQ990891e-97CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A067H6420.0A0A067H642_CITSI; Uncharacterized protein
TrEMBLV4U7K80.0V4U7K8_9ROSI; Uncharacterized protein
STRINGXP_006491223.10.0(Citrus sinensis)
STRINGXP_006444896.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.13e-60G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]