PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g021975m

Common Name

CISIN_1g019950mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 305aa MW: 33622.2 Da PI: 9.0643

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g021975m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.9	0.00069	88	103	1	16
EEETTTTEEESSHHHH CS zf-C2H2 1 ykCpdCgksFsrksnL 16 +kC +C+k++s+k+n+ orange1.1g021975m 88 FKCRKCDKTYSSKDNY 103 89***********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF53335	2.17E-26	135	281	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
Gene3D	G3DSA:3.40.50.150	1.2E-25	157	279	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
CDD	cd02440	5.74E-9	170	276	No hit	No description
Pfam	PF08241	4.0E-19	171	271	IPR013216	Methyltransferase type 11

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0032259	Biological Process	methylation
GO:0080167	Biological Process	response to karrikin
GO:0010287	Cellular Component	plastoglobule
GO:0008168	Molecular Function	methyltransferase activity

Sequence ? help Back to Top
Protein Sequence Length: 305 aa Download sequence Send to blast
MAIAAAAASS SSSLFPKYPC LSRNSPRLPQ SLRFSSTIRA VTLQPAKSER NQTLELEGDL 60 FSCPICYEPL IRKGPTGLTL GAIYRSGFKC RKCDKTYSSK DNYLDLTVIS GLKDYTEVKP 120 ASTELFRSPF VSFLYERGWR QNFNRSGFPG PDEEFKMAQE YFKSAQGGLL VDVSCGSGLF 180 SRKFAKSGTY SGVVALDFSE NMLRQCYDFI KQDNTILTSN LALVRADVCR LPFASGFVDA 240 VHAGAALHCW PSPSNAVAEI SRILRSGGVF VGTTFLRYTS STSLTGRVLR EDSAELQLFD 300 RRRD*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.11320	0.0	flower

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006453728.1	0.0	uncharacterized methyltransferase At2g41040, chloroplastic
Refseq	XP_024034457.1	0.0	uncharacterized methyltransferase At2g41040, chloroplastic
Swissprot	Q0WPT7	1e-133	Y2104_ARATH; Uncharacterized methyltransferase At2g41040, chloroplastic
TrEMBL	A0A067EZN1	0.0	A0A067EZN1_CITSI; Uncharacterized protein
STRING	XP_006453728.1	0.0	(Citrus clementina)

Link Out ? help Back to Top
Phytozome	orange1.1g021975m

Publications ? help Back to Top
Vidi PA, et al. Tocopherol cyclase (VTE1) localization and vitamin E accumulation in chloroplast plastoglobule lipoprotein particles. J. Biol. Chem., 2006. 281(16): p. 11225-34 [PMID:16414959] Ytterberg AJ,Peltier JB,van Wijk KJ Protein profiling of plastoglobules in chloroplasts and chromoplasts. A surprising site for differential accumulation of metabolic enzymes. Plant Physiol., 2006. 140(3): p. 984-97 [PMID:16461379] Lundquist PK, et al. The functional network of the Arabidopsis plastoglobule proteome based on quantitative proteomics and genome-wide coexpression analysis. Plant Physiol., 2012. 158(3): p. 1172-92 [PMID:22274653]