PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g021945m | ||||||||
Common Name | CISIN_1g021945mg, LOC102623456 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | RAV | ||||||||
Protein Properties | Length: 306aa MW: 34622.8 Da PI: 6.6231 | ||||||||
Description | RAV family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 42.5 | 1.6e-13 | 31 | 79 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f +eeAa+ ++ a+++++g orange1.1g021945m 31 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFIEEEEAARVYDTAALRFRG 79 89****9888.8*********3.....5*************************98 PP | |||||||
2 | B3 | 91.2 | 7.9e-29 | 164 | 256 | 1 | 88 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 f+kvltpsdv+k++r+v+pk+ ae+h +++ ++ l +ed++ ++W+++++y+ +s++yvltkGW++Fvk++g+k+gD+v F +++ orange1.1g021945m 164 FEKVLTPSDVGKLNRMVIPKQQAEKHfalsSEIASKGLLLNFEDSTQKVWRLRYCYWSSSQSYVLTKGWSRFVKEKGVKAGDTVSFWRSNVg 255 99*************************99966777899************************************************866554 PP S CS B3 88 s 88 s orange1.1g021945m 256 S 256 4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.5E-7 | 31 | 79 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.12E-26 | 31 | 89 | No hit | No description |
SuperFamily | SSF54171 | 2.22E-16 | 31 | 89 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-20 | 32 | 88 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.744 | 32 | 87 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.0E-28 | 32 | 93 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-36 | 160 | 268 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.51E-26 | 162 | 262 | No hit | No description |
SuperFamily | SSF101936 | 1.83E-28 | 162 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 8.8E-26 | 164 | 261 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.028 | 164 | 268 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.8E-19 | 164 | 267 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MASNSSSVDL DHDHNLSENG IDAESKKLPS SKYKGVVPQP NGRWGAQIYE KHQRVWLGTF 60 IEEEEAARVY DTAALRFRGQ NAITNFRTSL ETDDEDDYME KIFLSSHSKA EIVDMLRKHT 120 YKHELEQSKQ NYACVGISCY NNSSGFSDLF GSNCFQETPV EFLFEKVLTP SDVGKLNRMV 180 IPKQQAEKHF ALSSEIASKG LLLNFEDSTQ KVWRLRYCYW SSSQSYVLTK GWSRFVKEKG 240 VKAGDTVSFW RSNVGSNSKL FIDCKLQQNG NGSGFEEMQS QVPNIGVVRL FGVNILEDPN 300 NLCCR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wid_A | 2e-43 | 160 | 265 | 10 | 115 | DNA-binding protein RAV1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.2831 | 0.0 | callus| vegetative meristem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006482296.1 | 0.0 | AP2/ERF and B3 domain-containing transcription repressor RAV2 | ||||
Swissprot | P82280 | 1e-107 | RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2 | ||||
TrEMBL | A0A067F6V7 | 0.0 | A0A067F6V7_CITSI; Uncharacterized protein | ||||
STRING | XP_006482296.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM848 | 27 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68840.2 | 1e-109 | related to ABI3/VP1 2 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g021945m |
Entrez Gene | 102623456 |