PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g021941m
Common NameCISIN_1g021941mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ZF-HD
Protein Properties Length: 306aa    MW: 34052.4 Da    PI: 8.5114
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g021941mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer99.22.9e-3177133360
        ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                         +rY+eClkNhAa +Gg+ +DGCgEfmps g+egt +alkCaAC+CHRnFHR+e + e
  orange1.1g021941m  77 VIRYRECLKNHAACIGGNIFDGCGEFMPS-GDEGTLEALKCAACECHRNFHRKEIDGE 133
                        589*************************9.999********************98865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-2277131IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.3E-2878130IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.4E-2979130IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.24180129IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.57E-17230293IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.4E-30233295IPR009057Homeodomain-like
TIGRFAMsTIGR015654.7E-28234291IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MEIKQENETK TPRRDGNNDN GTAVYSFNTH QTLDHNLQRH QQQQQARSPN PDRVTSVIGA  60
AIAPISAGSN SKPPINVIRY RECLKNHAAC IGGNIFDGCG EFMPSGDEGT LEALKCAACE  120
CHRNFHRKEI DGETAQLIST GRRSAVMLNP LQLPPPLPSP TMMHHHHHHH QKYSISRHTM  180
SPSSAIVAPM NVAFGGGISE SSSEDLSNVL HSEGVLQHQP PAAPPPPPPF VLSKKRFRTK  240
FTQEQKDKMM EFAEKVGWRF QKQDDDQVDK FCAEVGVKRH VFKVWMHNNK NNTVKNKQEP  300
AADPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-242332921675ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.165900.0flower| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:21059647, ECO:0000269|PubMed:21779177}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00238DAPTransfer from AT1G75240Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269|PubMed:21779177}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006473514.10.0zinc-finger homeodomain protein 5
SwissprotQ9FRL58e-65ZHD5_ARATH; Zinc-finger homeodomain protein 5
TrEMBLA0A067H0Z50.0A0A067H0Z5_CITSI; Uncharacterized protein
STRINGXP_006473514.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72792543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.11e-58homeobox protein 33