PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g021910m | ||||||||
Common Name | CISIN_1g021910mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 306aa MW: 35085.9 Da PI: 6.8708 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.1 | 5.9e-52 | 9 | 132 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtdeelv++yL++k++g ++++ +i+e+d+yk++Pw+Lp++++ +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg dk++ orange1.1g021910m 9 LPPGFRFHPTDEELVNHYLCRKCAGLPISV-PIIAEIDLYKYDPWELPEMARYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPI 99 79****************************.88***************8888899************************************* PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyr 127 + ++ g+kk Lvfy g+apkg kt+W+mheyr orange1.1g021910m 100 GK--PKTLGIKKALVFYAGKAPKGIKTNWIMHEYR 132 98..778***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.55E-62 | 5 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.945 | 9 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-27 | 10 | 132 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MMKGAELELP PGFRFHPTDE ELVNHYLCRK CAGLPISVPI IAEIDLYKYD PWELPEMARY 60 GEKEWYFFSP RDRKYPNGSR PNRAAGSGYW KATGADKPIG KPKTLGIKKA LVFYAGKAPK 120 GIKTNWIMHE YRPANVHRSP ATKNNLRLDD WVLCRLYNKK GRMEKHYPSD QKSIGFPELE 180 EDRKPNINIS RQEVALGMPP HQGSPVPMMN DLLNMDTSDS VPRLQTDSSC SEHVLSPEIA 240 CDKEVQSVPK WNDLGNALND DYNQFSFNYM DTNSFQDDPF GPQVQYQMDQ LSPYQDLFMI 300 LQKPF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-82 | 5 | 165 | 11 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.8323 | 0.0 | flower| fruit |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00121 | DAP | Transfer from AT1G01720 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF596736 | 0.0 | EF596736.1 Citrus sinensis NAC domain protein (NAC) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006432090.1 | 0.0 | NAC domain-containing protein 2 | ||||
Swissprot | Q39013 | 1e-121 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A067EB13 | 0.0 | A0A067EB13_CITSI; Uncharacterized protein | ||||
STRING | XP_006464926.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006432090.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM190 | 28 | 276 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-123 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g021910m |