PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g021882m

Common Name

CISIN_1g019011mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NAC

Protein Properties

Length: 307aa MW: 34032 Da PI: 8.8263

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g021882m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	101.1	1.5e-31	25	98	54	128
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk +++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl orange1.1g021882m 25 GEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITT-EGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRL 98 689********************************9999.999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	41.166	1	121	IPR003441	NAC domain
SuperFamily	SSF101941	2.35E-42	20	121	IPR003441	NAC domain
Pfam	PF02365	5.9E-15	28	98	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009737	Biological Process	response to abscisic acid
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MKISSTDFFE IWDCCGVVAG KAIFGEKEWY FFSPRDRKYP NGSRPNRVAG SGYWKATGTD 60 KIITTEGRKV GIKKALVFYV GKAPKGTKTN WIMHEYRLFE PSRKNGSSKL DDWVLCRIYK 120 KHSGSQKPVS ATSVSSSKEH SNGSCSSSSS HLDDVLESLP EIDDRFFALP RMNSLKTLQQ 180 EDNKVNNLQH LGSGNFDWAS LAGLHSVPEF VSAAQTQTTT QSHGVACYAN NDFYVPSMPQ 240 MCHVNSGRVG NSVEEEVQSG LRNQRVDNSG LFQHNSAVLT QPNFCSLVDP YGLRHPTQSS 300 GFGFRH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-69	9	127	57	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-69	9	127	57	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-69	9	127	57	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-69	9	127	57	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-69	3	127	52	174	NAC domain-containing protein 19
3swm_B	4e-69	3	127	52	174	NAC domain-containing protein 19
3swm_C	4e-69	3	127	52	174	NAC domain-containing protein 19
3swm_D	4e-69	3	127	52	174	NAC domain-containing protein 19
3swp_A	4e-69	3	127	52	174	NAC domain-containing protein 19
3swp_B	4e-69	3	127	52	174	NAC domain-containing protein 19
3swp_C	4e-69	3	127	52	174	NAC domain-containing protein 19
3swp_D	4e-69	3	127	52	174	NAC domain-containing protein 19
4dul_A	4e-69	9	127	57	171	NAC domain-containing protein 19
4dul_B	4e-69	9	127	57	171	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.4623	0.0	flower\| fruit\| leaf\| vegetative meristem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in guard cells of the epidermis. {ECO:0000269\|PubMed:25005917}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269\|PubMed:25005917, ECO:0000269\|PubMed:28733419, ECO:0000269\|PubMed:30610166}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006464708.1	0.0	NAC domain-containing protein 72
Swissprot	A0A3Q7HH64	1e-109	JA2L_SOLLC; NAC domain-containing protein JA2L
TrEMBL	A0A067GFM5	0.0	A0A067GFM5_CITSI; Uncharacterized protein
TrEMBL	A0A2H5Q4J4	0.0	A0A2H5Q4J4_CITUN; Uncharacterized protein
STRING	XP_006464708.1	0.0	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	1e-88	NAC family protein

Link Out ? help Back to Top
Phytozome	orange1.1g021882m

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Du M, et al. MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato. Plant Cell, 2017. 29(8): p. 1883-1906 [PMID:28733419] Liu Y, et al. MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop. Plant Cell, 2019. 31(1): p. 106-127 [PMID:30610166]