PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g021872m

Common Name

CISIN_1g021481mg, LOC102617659

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

G2-like

Protein Properties

Length: 307aa MW: 33276.9 Da PI: 6.6224

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g021872m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.2	4.4e-34	40	94	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLH+rFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl orange1.1g021872m 40 KPRLRWTAELHDRFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 94 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.6E-33	37	95	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.624	37	97	IPR017930	Myb domain
SuperFamily	SSF46689	3.05E-17	39	95	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-24	40	95	IPR006447	Myb domain, plants
Pfam	PF00249	1.8E-8	42	93	IPR001005	SANT/Myb domain
Pfam	PF14379	7.5E-27	138	184	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010628	Biological Process	positive regulation of gene expression
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MYSAIHSLPL DGGHPDFQGG PLDGTNLPGD ACLVLTTDPK PRLRWTAELH DRFVDAVTQL 60 GGPDKATPKT IMRTMGVKGL TLYHLKSHLQ KYRLGKQACK ETTENSKDVS CVAESQDTGS 120 STTSSTRMVA QDPNDGYQVT EALRVQMEVQ RRLHEQLEVQ RRLQLRIEAQ GKYLQSILEK 180 ACKALNDQAI VAAGLEAARE ELSELAIKVS NDCQGMVPLE NIKMPSISEL AAALESKNAS 240 TIPARIGDCS VESCLTSTSS PVSPMGLGSQ AAAMKKRPRP LFGNGESLPL EGNMRQEVEW 300 VMPHIG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-19	40	96	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-19	40	96	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	5e-19	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-19	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-19	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-19	40	96	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-19	40	96	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-19	40	96	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-19	40	96	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-19	40	96	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-19	40	96	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-19	40	96	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	275	279	KRPRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00378	DAP	Transfer from AT3G24120	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006493809.1	0.0	protein PHR1-LIKE 3 isoform X1
Swissprot	Q94A57	1e-145	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A067F526	0.0	A0A067F526_CITSI; Uncharacterized protein
STRING	XP_006493809.1	0.0	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	1e-130	G2-like family protein

Link Out ? help Back to Top
Phytozome	orange1.1g021872m
Entrez Gene	102617659

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]