PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g021816m
Common NameCISIN_1g021816mg, LOC102610732
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 308aa    MW: 34408.5 Da    PI: 9.6746
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g021816mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.1e-082872345
                       SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                       rWT+ E + + +a + + ++   +W ++a++++ g+t  +++  + 
  orange1.1g021816m 28 RWTAAENKMFENALAVYDKDspdRWQKVAAMIP-GKTVVDVIKQYK 72
                       9********************************.******998886 PP
2Myb_DNA-binding47.44.4e-15136180347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT+eE++l++ + k++G+g+W+ I+r + + Rt+ q+ s+ qky
  orange1.1g021816m 136 PWTEEEHKLFLLGLKKHGKGDWRNISRNFVTSRTPTQVASHAQKY 180
                        8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.5E-42373IPR009057Homeodomain-like
PROSITE profilePS512937.9042479IPR017884SANT domain
SMARTSM007172.9E-92577IPR001005SANT/Myb domain
SuperFamilySSF466896.43E-112782IPR009057Homeodomain-like
CDDcd001673.45E-72874No hitNo description
PfamPF002494.0E-62873IPR001005SANT/Myb domain
PROSITE profilePS5129420.62129185IPR017930Myb domain
SuperFamilySSF466895.1E-17131184IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-16132184IPR006447Myb domain, plants
SMARTSM007175.7E-13133183IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-12133180IPR009057Homeodomain-like
PfamPF002492.2E-12136180IPR001005SANT/Myb domain
CDDcd001673.65E-11136181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MKWETEVISP ASYISSSNWL LEESKSTRWT AAENKMFENA LAVYDKDSPD RWQKVAAMIP  60
GKTVVDVIKQ YKELEADISN IEAGLIPLPG YGNSSPFTLE WVNNHGYDGF KHPYAVGGKR  120
SSSVRPAEHE RKKGVPWTEE EHKLFLLGLK KHGKGDWRNI SRNFVTSRTP TQVASHAQKY  180
FIRQLSGGKD KRRASIHDIT TVNLNETRTS SPDTQRAPSP EQVTSGLSQQ QPNCGGALSR  240
TNFQWHQPNN GATTAFGSTQ GNMFMTSPYG INSYGIKMPG QNLQRDAVHE PYFGLQNLAF  300
QMQFPQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-1629911173RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.114280.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425017.10.0transcription factor DIVARICATA
RefseqXP_024957447.10.0transcription factor DIVARICATA
SwissprotQ8S9H71e-137DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A067FUC60.0A0A067FUC6_CITSI; Uncharacterized protein
TrEMBLA0A2H5NCI30.0A0A2H5NCI3_CITUN; Uncharacterized protein
TrEMBLV4SCK80.0V4SCK8_9ROSI; Uncharacterized protein
STRINGXP_006488482.10.0(Citrus sinensis)
STRINGXP_006425017.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122827100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.14e-92MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]