PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g021785m

Common Name

CISIN_1g021785mg, LOC102620096

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NAC

Protein Properties

Length: 308aa MW: 35488 Da PI: 8.8853

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g021785m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	163.2	9.9e-51	25	153	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 + pGfrFhPtdeelv +yL++kve+k++++ e+ik++diyk++PwdLpk + ++kewyfF+ r +ky+++ r+nr+t sg+Wkatg dk++ orange1.1g021785m 25 MLPGFRFHPTDEELVGFYLRRKVEKKPISI-EIIKQADIYKYDPWDLPKVSTVGDKEWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPI 115 579*************************.89***********8777899*********************************** PP NAM 93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +s+ +e +glkk+Lv+y+g+a kg+ktdW+mhe+rl orange1.1g021785m 116 HSAkePHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 153 97544556**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.19E-56	22	182	IPR003441	NAC domain
PROSITE profile	PS51005	53.895	25	183	IPR003441	NAC domain
Pfam	PF02365	2.1E-25	27	153	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005992	Biological Process	trehalose biosynthetic process
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006561	Biological Process	proline biosynthetic process
GO:0009718	Biological Process	anthocyanin-containing compound biosynthetic process
GO:0010120	Biological Process	camalexin biosynthetic process
GO:0042538	Biological Process	hyperosmotic salinity response
GO:1900056	Biological Process	negative regulation of leaf senescence
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MEMTKMSTTT TTSSDNKLQN HEEVMLPGFR FHPTDEELVG FYLRRKVEKK PISIEIIKQA 60 DIYKYDPWDL PKVSTVGDKE WYFFCIRGRK YRNSIRPNRV TGSGFWKATG IDKPIHSAKE 120 PHECIGLKKS LVYYRGSAGK GTKTDWMMHE FRLPPNGKIT NFSNTKDIAQ EAEVWTLCRI 180 FKRTPSYKKY TPNWKDSSTV AAANATKLHN PTDSSSKTCS SSLESETSCE QQQYMHQQKE 240 TKPFIINHVD QRNHPLTTQS QLSPYPASYY SSLWNLNGDD FFTNGNWDEL RSVVELAVDP 300 PHVYDCR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-48	27	189	19	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-48	27	189	19	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-48	27	189	19	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-48	27	189	19	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-48	27	189	22	174	NAC domain-containing protein 19
3swm_B	4e-48	27	189	22	174	NAC domain-containing protein 19
3swm_C	4e-48	27	189	22	174	NAC domain-containing protein 19
3swm_D	4e-48	27	189	22	174	NAC domain-containing protein 19
3swp_A	4e-48	27	189	22	174	NAC domain-containing protein 19
3swp_B	4e-48	27	189	22	174	NAC domain-containing protein 19
3swp_C	4e-48	27	189	22	174	NAC domain-containing protein 19
3swp_D	4e-48	27	189	22	174	NAC domain-containing protein 19
4dul_A	4e-48	27	189	19	171	NAC domain-containing protein 19
4dul_B	4e-48	27	189	19	171	NAC domain-containing protein 19
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, root caps, cotyledons, tips and margin of young leaves, senescent regions of fully expanded leaves and floral tissues, including old sepals, petals, staments, mature anthers and pollen grains. Not detected in the abscission zone of open flowers, emerging lateral roots and root meristematic zones. {ECO:0000269\|PubMed:22345491}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269\|PubMed:22345491}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00310	DAP	Transfer from AT2G43000	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269\|PubMed:22345491}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006437126.1	0.0	transcription factor JUNGBRUNNEN 1 isoform X1
Refseq	XP_006484909.1	0.0	transcription factor JUNGBRUNNEN 1 isoform X1
Swissprot	Q9SK55	3e-96	NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBL	A0A067E9W2	0.0	A0A067E9W2_CITSI; Uncharacterized protein
TrEMBL	A0A2H5QU55	0.0	A0A2H5QU55_CITUN; Uncharacterized protein
TrEMBL	V4TKN8	0.0	V4TKN8_9ROSI; Uncharacterized protein
STRING	XP_006484909.1	0.0	(Citrus sinensis)
STRING	XP_006437126.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM306	28	200

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43000.1	2e-92	NAC domain containing protein 42

Link Out ? help Back to Top
Phytozome	orange1.1g021785m
Entrez Gene	102620096

Publications ? help Back to Top
Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins. Plant Signal Behav, 2016. 11(6): p. e1181245 [PMID:27159137] Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling. Nat Plants, 2016. 2: p. 16013 [PMID:27249348] Shahnejat-Bushehri S, et al. Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato. Front Plant Sci, 2017. 8: p. 214 [PMID:28326087] Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways. Plant J., 2017. 92(6): p. 1106-1120 [PMID:29032592] Ebrahimian-Motlagh S, et al. JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13. Front Plant Sci, 2017. 8: p. 2118 [PMID:29326734]