PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g021772m

Common Name

CISIN_1g021772mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NAC

Protein Properties

Length: 308aa MW: 35170.8 Da PI: 5.1898

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g021772m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	114.8	8.9e-36	5	132	3	128
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +GfrFhPtdee++ L+ k + +++ ++ike+d+y++ePw+Lp +++++ee+ wyfF++ kya++kr+nr tk+gyWk+tg+ ++ orange1.1g021772m 5 VGFRFHPTDEEII-LLLTLKRFDPGFSV-RTIKEIDLYSFEPWELPwhSEIQSEEEVWYFFCEPYYKYAKSKRANRRTKEGYWKKTGNGSKI 94 7**********.66777777888888.78**********97448889999********************************** PP NAM 93 lsk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128 ++k ++e++g+kk+L f + +a k kt+Wv+he ++ orange1.1g021772m 95 KRKySTEVIGTKKILSFLRDdTAAKKAKTEWVIHEIAV 132 9988899*******764788889******875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	40.716	3	150	IPR003441	NAC domain
SuperFamily	SSF101941	1.1E-38	4	150	IPR003441	NAC domain
Pfam	PF02365	1.3E-17	5	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MDSLVGFRFH PTDEEIILLL TLKRFDPGFS VRTIKEIDLY SFEPWELPWH SEIQSEEEVW 60 YFFCEPYYKY AKSKRANRRT KEGYWKKTGN GSKIKRKYST EVIGTKKILS FLRDDTAAKK 120 AKTEWVIHEI AVEDSPDYEK DFVVCRLERK RDKKHDVSKD QSIQAKGHMN RVVENTVLVS 180 DDQARDHRNH VAENTVENSA KTRQLAEFNP QGGGYNGLSD ASFPALRPPV YSEQESSCAN 240 GSSYGSGLLN SQFDGEQVDG QFNSRRDFQN EYSSDETGQT TPDFFSSKSD EGVFLEDSSE 300 PSPSMNG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-21	6	151	20	166	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-21	6	151	20	166	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-21	6	151	20	166	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-21	6	151	20	166	NO APICAL MERISTEM PROTEIN
4dul_A	2e-21	6	151	20	166	NAC domain-containing protein 19
4dul_B	2e-21	6	151	20	166	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015387910.1	1e-153	NAC domain-containing protein 89-like
Refseq	XP_015387911.1	1e-153	NAC domain-containing protein 89-like
Refseq	XP_015387913.1	1e-153	NAC domain-containing protein 89-like
Refseq	XP_024042301.1	1e-153	NAC domain-containing protein 89-like
Refseq	XP_024956939.1	1e-153	NAC domain-containing protein 89-like
Refseq	XP_024956940.1	1e-153	NAC domain-containing protein 89-like
TrEMBL	A0A067E037	0.0	A0A067E037_CITSI; Uncharacterized protein
STRING	XP_006485395.1	1e-152	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13336	4	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G07680.2	1e-32	NAC domain containing protein 80

Link Out ? help Back to Top
Phytozome	orange1.1g021772m