PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g021647m | ||||||||
Common Name | CISIN_1g017978mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 310aa MW: 34401.4 Da PI: 7.2206 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 32.8 | 1.5e-10 | 1 | 23 | 33 | 55 |
G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55 +++m+++gLtl+h+kSHLQkYRl orange1.1g021647m 1 MRVMGIPGLTLYHLKSHLQKYRL 23 789*******************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.4E-9 | 1 | 24 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 1.0E-22 | 69 | 115 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 310 aa Download sequence Send to blast |
MRVMGIPGLT LYHLKSHLQK YRLGKSQHVE ACIDNKQVVE YKETQSSSDG HVNRNISDGT 60 LNQLNESLQI AQALQVQMEV QRKLHEQIEV QRHLQLRIEA QGKYLQSVLK KAQETLAGYS 120 SSSAGVELAK AELSQLVSMV SMGCPSSSVS ELTEAGTSSL KDFERKQIRS TICSMESSLT 180 SSESSGRKEE KQPVNEIGDT DTCKSNKTTP ELQLMDIHIH PQDKPFKARS SNQASGRKRR 240 ESTISDGFPD EQQTAKRLAT QNEKYDDQLR NTGLVGRFDL NSQYQNESES GSKAIDLNCK 300 GLDQLNGPL* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006438708.1 | 0.0 | myb family transcription factor PHL8 isoform X3 | ||||
Refseq | XP_006483142.1 | 0.0 | myb family transcription factor PHL8-like isoform X4 | ||||
Swissprot | F4I274 | 3e-55 | PHL8_ARATH; Myb family transcription factor PHL8 | ||||
TrEMBL | A0A067GTA5 | 0.0 | A0A067GTA5_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A067H5V6 | 0.0 | A0A067H5V6_CITSI; Uncharacterized protein | ||||
STRING | XP_006438708.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69580.1 | 3e-57 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g021647m |
Publications ? help Back to Top | |||
---|---|---|---|
|