PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g021635m
Common NameCISIN_1g021635mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 311aa    MW: 34500.7 Da    PI: 9.3308
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g021635mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.48.2e-34722121128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk... 79 
                        lp+G++F+Ptd+el+ e+L++kv+++       ++  e   +++   +i++++P++Lp  v+++    +fF++ +k+y+tg+rk+r+++   
  orange1.1g021635m  72 LPAGVKFDPTDQELL-EHLEAKVRADArklhplID--EfipTLEGEnGICYTHPEKLP-GVSKDGLIRHFFHRPSKAYTTGTRKRRKVHtde 159
                        799************.99*****999956643322..22222333336**********.555555677******************744456 PP

                NAM  80 ...sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                           + +W++tgk+++v+  +g+++g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  orange1.1g021635m 160 qggETRWHKTGKTRPVFI-GGKVKGYKKILVLYtnYGKQKKPEKTNWVMHQYHL 212
                        555778************.9*************6658999************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-3865231IPR003441NAC domain
PROSITE profilePS5100533.69472231IPR003441NAC domain
PfamPF023654.4E-1673212IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MTWCNDCSDV QTIERISSPP SSSTNNNNNN NNNTSNSSSS AKAKNCLVRS CPSCGHQIKC  60
NEQARIHDLP GLPAGVKFDP TDQELLEHLE AKVRADARKL HPLIDEFIPT LEGENGICYT  120
HPEKLPGVSK DGLIRHFFHR PSKAYTTGTR KRRKVHTDEQ GGETRWHKTG KTRPVFIGGK  180
VKGYKKILVL YTNYGKQKKP EKTNWVMHQY HLGGNEEEKD GELVVSKVFY QTQPRQCGNS  240
VIKDSSSLPP KFNINKGQSG LDGLKNNPGV VDYYNPPFIA FDQGGGQNRA SPPQALIPPH  300
FAAHDTSFIP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-127221215140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006469079.10.0NAC domain-containing protein 73
SwissprotO494591e-130NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A067E2W40.0A0A067E2W4_CITSI; Uncharacterized protein
TrEMBLA0A2H5PU340.0A0A2H5PU34_CITUN; Uncharacterized protein
STRINGXP_006469079.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20122881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-129NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]