 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
orange1.1g021524m |
| Common Name | CISIN_1g021524mg, LOC102620390 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 312aa MW: 34827.6 Da PI: 9.796 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| orange1.1g021524m | genome | ICGC | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 337.3 | 4e-103 | 1 | 311 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkg.yye................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkal 74
mdd +++ r k yy+ p+++l +++++m+++aerda+irern+al+ek++a+ +rd a+ +rdkalaer++al
orange1.1g021524m 1 MDDGHHENgRYKMeYYKgthaqwnmmpqhqmkePNNALV--MNKKIMAILAERDAAIRERNIALTEKREALETRDQALEERDKALAERDDAL 90
88888888999988999********98766643335555..99************************************************* PP
GAGA_bind 75 verdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpk.ekkak 165
+ rd++l+al+++e ++++++ + +g k +++ ++ ++a + +++ ++a+pi+ ++e+k ++ k++++++ ++k + +
orange1.1g021524m 91 MARDSALAALQYREAAANFSS--VGGFQRGGKRMHHPTY--QSGDVPEALNSGDMHATDAKPITIIPSETKPHQAKRAKENKIVTKpSVSPR 178
************999977655..5677899999998887..3444566677899********998777666544444333333333133456 PP
GAGA_bind 166 kkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiag 257
k+kk +e+ +kkv++++ ++ k+e++s+d +ln v++De+t+PvPvC+CtG+++qCYkWGnGGWqS+CCttt+S yPLP+++++r+aR++g
orange1.1g021524m 179 KVKKVGEDLNKKVASDG--KKIKSEWDSQD-GLNLVNFDETTMPVPVCTCTGTPHQCYKWGNGGWQSSCCTTTLSSYPLPQMPNKRHARVGG 267
88999999999999999..57*********.9************************************************************ PP
GAGA_bind 258 rKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
rKmS+++f+klL++LaaeG+dls p+DLk++WAkHGtn+++ti+
orange1.1g021524m 268 RKMSGSVFTKLLSRLAAEGHDLSVPLDLKNFWAKHGTNRYITIK 311
*******************************************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009723 | Biological Process | response to ethylene |
| GO:0050793 | Biological Process | regulation of developmental process |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 312 aa
Download sequence Send
to blast |
MDDGHHENGR YKMEYYKGTH AQWNMMPQHQ MKEPNNALVM NKKIMAILAE RDAAIRERNI 60
ALTEKREALE TRDQALEERD KALAERDDAL MARDSALAAL QYREAAANFS SVGGFQRGGK 120
RMHHPTYQSG DVPEALNSGD MHATDAKPIT IIPSETKPHQ AKRAKENKIV TKPSVSPRKV 180
KKVGEDLNKK VASDGKKIKS EWDSQDGLNL VNFDETTMPV PVCTCTGTPH QCYKWGNGGW 240
QSSCCTTTLS SYPLPQMPNK RHARVGGRKM SGSVFTKLLS RLAAEGHDLS VPLDLKNFWA 300
KHGTNRYITI K*
|
| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Csi.4240 | 0.0 | flower| fruit| root| seed| vegetative meristem |
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal and petal vasculature, in anthers, in young rosette, in the lateral and primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
