PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g021461m | ||||||||
Common Name | CISIN_1g017195mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | GATA | ||||||||
Protein Properties | Length: 313aa MW: 34325.1 Da PI: 7.7831 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 48.5 | 1.2e-15 | 207 | 243 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg ++ Tp +Rrgp g++tLCnaCGl+++ kg+ orange1.1g021461m 207 CQHCGISEklTPAMRRGPAGPRTLCNACGLMWANKGT 243 **********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 11.796 | 70 | 105 | IPR010399 | Tify domain |
SMART | SM00979 | 7.7E-4 | 70 | 105 | IPR010399 | Tify domain |
Pfam | PF06200 | 1.4E-8 | 74 | 104 | IPR010399 | Tify domain |
Pfam | PF06203 | 1.3E-14 | 138 | 180 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 13.066 | 138 | 180 | IPR010402 | CCT domain |
SMART | SM00401 | 3.7E-10 | 201 | 254 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 6.65E-12 | 203 | 256 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.5E-15 | 205 | 248 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.00E-14 | 206 | 250 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 207 | 234 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.1E-13 | 207 | 243 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MFAMNPQPLQ ARPYIDTEEH DVAQTPIPIQ NGSKQGDRYD EPEEVEDEAG ASSVNRKSND 60 RGGSSVQSST STRTSELTVA YEGEVYVFPA VTPHKVQALL LLLGECDIPS TVPSSAFAQP 120 QNIMSGGSAS NGSKLSQRIA SLVRFREKRK ERSFEKKIRY SCRKEVAQRM QRKNGQFTSS 180 KATFNIASAN SNPSNGSAPP ESVSRICQHC GISEKLTPAM RRGPAGPRTL CNACGLMWAN 240 KGTLRDLTKG ARNICFEQHE LETSSDIKPA TTEAENSYAN QDEQGSPHET KPAPLDPQNH 300 SMRSNEQVWQ FF* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.3659 | 5e-60 | callus |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in shoot apices, inflorescences and roots. {ECO:0000269|PubMed:14966217}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006423708.1 | 0.0 | GATA transcription factor 19 | ||||
Swissprot | Q8GXL7 | 1e-60 | GAT24_ARATH; GATA transcription factor 24 | ||||
TrEMBL | A0A067EFW3 | 0.0 | A0A067EFW3_CITSI; Uncharacterized protein | ||||
STRING | XP_006423708.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21175.1 | 4e-50 | ZIM-like 1 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g021461m |
Publications ? help Back to Top | |||
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