PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g021455m | ||||||||
Common Name | CISIN_1g021329mg, LOC102626300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | GATA | ||||||||
Protein Properties | Length: 313aa MW: 34787 Da PI: 10.0619 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.3 | 4.9e-19 | 176 | 209 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+tt+TplWR+gp+g+k+LCnaCG+++rk + orange1.1g021455m 176 CSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR 209 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 9.03E-13 | 169 | 211 | No hit | No description |
PROSITE profile | PS50114 | 13.257 | 170 | 206 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 3.5E-18 | 170 | 221 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 5.0E-15 | 174 | 210 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.19E-13 | 175 | 205 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 176 | 201 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 8.0E-17 | 176 | 209 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MTPVHLNPPH DSDPFQLAEE QKDDQHLHLL HSSSHNRAAS SSVSWTNFQD QRMIIMEESQ 60 QHDQKVDHSG SSNLQVFSSS SIQTKKMNNI TNNKLPIRKR EVGEGTTSEN GSSSSGKWMS 120 SKIRLMHKMI NSSSNSTATH ELAVKVTQKL QYHQLHDNSE VNSFNSSNSN NTMRACSDCN 180 TTTTPLWRSG PRGPKSLCNA CGIRQRKARR AMQAAAAVET GTIAATGGSP FAKIKLQIKD 240 KKPRTSHVSQ NKKQYRTLDP DPTHQYQSQR KLCFKDFAIA LSKNSALKQV FPQDVEEAAI 300 LLMELSCGFI HS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006450838.1 | 0.0 | putative GATA transcription factor 22 isoform X2 | ||||
Refseq | XP_006475926.1 | 0.0 | putative GATA transcription factor 22 isoform X2 | ||||
TrEMBL | A0A067GK43 | 0.0 | A0A067GK43_CITSI; Uncharacterized protein | ||||
TrEMBL | V4TU86 | 0.0 | V4TU86_9ROSI; Uncharacterized protein | ||||
STRING | XP_006475925.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006450839.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56860.1 | 2e-15 | GATA family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g021455m |
Entrez Gene | 102626300 |