PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g021353m
Common NameCISIN_1g0213532mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 314aa    MW: 34959.9 Da    PI: 5.0155
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g021353mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM80.63.2e-251311336128
                NAM  36 evdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkge 117
                        + +i++++P++Lp  +k++ ++++fF+++ ++yatg+rk+r+         ++ +W++tgk+k+v++ +g ++g++k++v+y  +++  k+ 
  orange1.1g021353m  13 DQGICYTHPENLP-GAKKDGSSVHFFHRTTNAYATGQRKRRKiqsehslnEEHVRWHKTGKTKPVIE-NGIQKGCRKIMVLYksTKKGTKPD 102
                        347**********.55677899*******************85677666655899************.99************4434666778 PP

                NAM 118 ktdWvmheyrl 128
                        k++Wvmh+y+l
  orange1.1g021353m 103 KSNWVMHQYHL 113
                        *********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.7921132IPR003441NAC domain
SuperFamilySSF1019413.14E-2710132IPR003441NAC domain
PfamPF023657.7E-825113IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MFIDEFIPTI EGDQGICYTH PENLPGAKKD GSSVHFFHRT TNAYATGQRK RRKIQSEHSL  60
NEEHVRWHKT GKTKPVIENG IQKGCRKIMV LYKSTKKGTK PDKSNWVMHQ YHLGTDEDEK  120
DDEYVVSKVF YQQTKQPEKN VDSPIIEVPD NLIPDSSPRT PLTNPPNPPR PGKSMVCDDV  180
ADDNTLKSSA QEPLHVAEAS HVPQPAVKLE DDQGYITCLA GESEPQDIGD PGLDGIYDSL  240
LLCKEDISSK VFSGVNNVSY ADIFHNAHHM KGNDSAPCGI ADLENLEFDT PPDSHLADLQ  300
FSDESILGWL DRI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006446621.10.0SUPPRESSOR OF GAMMA RESPONSE 1 isoform X2
RefseqXP_024046837.10.0SUPPRESSOR OF GAMMA RESPONSE 1 isoform X1
TrEMBLA0A067E1D50.0A0A067E1D5_CITSI; Uncharacterized protein
STRINGXP_006446621.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50452651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14490.17e-60NAC domain containing protein 85