PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g021329m | ||||||||
Common Name | CISIN_1g021329mg, LOC102626300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | GATA | ||||||||
Protein Properties | Length: 315aa MW: 35014.3 Da PI: 10.1608 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 59.3 | 4.9e-19 | 178 | 211 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs C+tt+TplWR+gp+g+k+LCnaCG+++rk + orange1.1g021329m 178 CSDCNTTTTPLWRSGPRGPKSLCNACGIRQRKAR 211 *******************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 9.03E-13 | 171 | 213 | No hit | No description |
PROSITE profile | PS50114 | 13.257 | 172 | 208 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 3.5E-18 | 172 | 223 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 5.1E-15 | 176 | 212 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.44E-13 | 177 | 207 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 178 | 203 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 8.1E-17 | 178 | 211 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MTPVHLNPPH DSDPFQLAEE QKDDQHLHLL HSSSHNRAAS SSVSWTNFQD QRMIIMEESQ 60 QHDQKARVDH SGSSNLQVFS SSSIQTKKMN NITNNKLPIR KREVGEGTTS ENGSSSSGKW 120 MSSKIRLMHK MINSSSNSTA THELAVKVTQ KLQYHQLHDN SEVNSFNSSN SNNTMRACSD 180 CNTTTTPLWR SGPRGPKSLC NACGIRQRKA RRAMQAAAAV ETGTIAATGG SPFAKIKLQI 240 KDKKPRTSHV SQNKKQYRTL DPDPTHQYQS QRKLCFKDFA IALSKNSALK QVFPQDVEEA 300 AILLMELSCG FIHS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006450839.1 | 0.0 | putative GATA transcription factor 22 isoform X1 | ||||
Refseq | XP_006475925.1 | 0.0 | putative GATA transcription factor 22 isoform X1 | ||||
TrEMBL | A0A067GKD2 | 0.0 | A0A067GKD2_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5PZ50 | 0.0 | A0A2H5PZ50_CITUN; Uncharacterized protein | ||||
TrEMBL | V4WCB4 | 0.0 | V4WCB4_9ROSI; Uncharacterized protein | ||||
STRING | XP_006475925.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006450839.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16433 | 7 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56860.1 | 2e-15 | GATA family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g021329m |
Entrez Gene | 102626300 |