PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g021327m

Common Name

CISIN_1g021302mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

ZF-HD

Protein Properties

Length: 315aa MW: 34854.6 Da PI: 9.6229

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g021327m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	105.8	2.6e-33	140	196	3	60
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 ++rY+eClkNhAa++G+h++DGCgEfmps ge+gt+++lkCaAC+CHRnFHR+e + e orange1.1g021327m 140 SIRYRECLKNHAANMGSHVIDGCGEFMPS-GEDGTPEGLKCAACDCHRNFHRKEIDGE 196 689***********************9.999******************98765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	2.8E-30	141	193	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	1.0E-20	142	195	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.7E-30	142	193	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	26.083	143	192	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MELQGKEKEI GMTSSMRYNR DSSSTVSTPI NSIAGEMIRD QGTVHGEAIF NLPQTLDQHH 60 HPLYRHHQSN SQQQQQPQTQ QNLQNKPSAG SSNPEAQHPD PVPVSVANTT TTSTKEANRS 120 NQRSPAQAPT TSTAIITAPS IRYRECLKNH AANMGSHVID GCGEFMPSGE DGTPEGLKCA 180 ACDCHRNFHR KEIDGESQSQ SQYAAHSLYT YNYPSRNNST QRNHHHQQQQ QPPPPFHHLQ 240 QHHRISYTSP QTASIAPMMM TFGGGAGPGA VAGALMSRQA RISTCFILVQ VDRHRCRPRK 300 RGLGQSFPRN RKTR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006466804.1	1e-156	zinc-finger homeodomain protein 6-like
Refseq	XP_024037157.1	1e-156	zinc-finger homeodomain protein 6
TrEMBL	A0A067GVU9	0.0	A0A067GVU9_CITSI; Uncharacterized protein
STRING	XP_006466804.1	1e-156	(Citrus sinensis)
STRING	XP_006425664.1	1e-156	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75240.1	2e-27	homeobox protein 33

Link Out ? help Back to Top
Phytozome	orange1.1g021327m