PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g021256m
Common NameCISIN_1g017978mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family G2-like
Protein Properties Length: 316aa    MW: 35159.2 Da    PI: 6.9443
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g021256mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like32.81.6e-101233355
            G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55
                       +++m+++gLtl+h+kSHLQkYRl
  orange1.1g021256m  1 MRVMGIPGLTLYHLKSHLQKYRL 23
                       789*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-9124IPR009057Homeodomain-like
PfamPF143794.4E-1969121IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MRVMGIPGLT LYHLKSHLQK YRLGKSQHVE ACIDNKQVVE YKETQSSSDG HVNRNISDGT  60
LNQLNESLQI AQALQVQMEV QRKLHEQIEY ESYSQVQRHL QLRIEAQGKY LQSVLKKAQE  120
TLAGYSSSSA GVELAKAELS QLVSMVSMGC PSSSVSELTE AGTSSLKDFE RKQIRSTICS  180
MESSLTSSES SGRKEEKQPV NEIGDTDTCK SNKTTPELQL MDIHIHPQDK PFKARSSNQA  240
SGRKRRESTI SDGFPDEQQT AKRLATQNEK YDDQLRNTGL VGRFDLNSQY QNESESGSKA  300
IDLNCKGLDQ LNGPL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006483139.10.0myb family transcription factor PHL8-like isoform X1
RefseqXP_024041825.10.0myb family transcription factor PHL8 isoform X1
RefseqXP_024041826.10.0myb family transcription factor PHL8 isoform X2
SwissprotF4I2741e-52PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A067GTI50.0A0A067GTI5_CITSI; Uncharacterized protein
TrEMBLA0A067H5F80.0A0A067H5F8_CITSI; Uncharacterized protein
STRINGXP_006483139.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.11e-54G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]