PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g021220m
Common NameCISIN_1g021220mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 317aa    MW: 35167.2 Da    PI: 8.831
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g021220mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-171461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEde+l++++k +G g+W++ ++  g+ R++k+c++rw +yl
  orange1.1g021220m 14 KGAWTKEEDERLINYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                       79******************************99************97 PP
2Myb_DNA-binding58.61.4e-1867111147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        rg++T+eEdel+++ + +lG++ W++Ia++++ gRt++++k++w+++
  orange1.1g021220m  67 RGNFTEEEDELIINFHSLLGNK-WSLIAARLP-GRTDNEIKNYWNTH 111
                        89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-24564IPR009057Homeodomain-like
PROSITE profilePS5129417.683961IPR017930Myb domain
SMARTSM007178.0E-141363IPR001005SANT/Myb domain
SuperFamilySSF466891.62E-2913108IPR009057Homeodomain-like
PfamPF002491.9E-151461IPR001005SANT/Myb domain
CDDcd001675.97E-121661No hitNo description
PROSITE profilePS5129428.68762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-2865116IPR009057Homeodomain-like
SMARTSM007178.4E-1866114IPR001005SANT/Myb domain
PfamPF002496.1E-1767111IPR001005SANT/Myb domain
CDDcd001677.01E-1469112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MGRSPCCEKE HTNKGAWTKE EDERLINYIK VHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TEEEDELIIN FHSLLGNKWS LIAARLPGRT DNEIKNYWNT HIKRKLYSRG  120
IDPQTHRPLN SAPVPAPSPG NNNNNNSNKR NNNTSTNTKT DCSNKFEMNV QSNRPVMQLV  180
PEFIMSTGRS IGTDKNHNYH SPSSAEDSSN NTSGSGVTTE EAHQELNLEL SIGLPQQPRI  240
INQKPAAGGS YQFFGANTNN NPSTGAAQTG AACLCYNLGF QNSKLACSCS SNPMPMSTII  300
TADNNLHRFY RPPLDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-29141167108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in flowers and weakly in roots and stems. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426418.10.0myb-related protein 308
SwissprotP813934e-89MYB08_ANTMA; Myb-related protein 308
SwissprotP813954e-89MYB30_ANTMA; Myb-related protein 330
TrEMBLA0A067F6D40.0A0A067F6D4_CITSI; Uncharacterized protein
TrEMBLV4RXM70.0V4RXM7_9ROSI; Uncharacterized protein
STRINGXP_006426418.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.13e-87myb domain protein 7
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]