PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g021193m
Common NameCISIN_1g021193mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GATA
Protein Properties Length: 317aa    MW: 35280.1 Da    PI: 5.2654
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g021193mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.54.3e-19235268134
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                        Cs+C+t kTp+WR gp g+ktLCnaCG++y++ +
  orange1.1g021193m 235 CSHCQTQKTPQWRTGPLGPKTLCNACGVRYKSGR 268
                        *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.9E-7722314IPR016679Transcription factor, GATA, plant
SMARTSM004011.2E-13229279IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-14232292No hitNo description
Gene3DG3DSA:3.30.50.104.4E-15233266IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.622233265IPR000679Zinc finger, GATA-type
CDDcd002023.29E-14234285No hitNo description
PfamPF003209.4E-17235268IPR000679Zinc finger, GATA-type
PROSITE patternPS003440235260IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MEFCMEARAF KPSLRRELSC CLKSTQQVFF DDIPCVSNED FSVDDLLDFS NGDFEDGSVD  60
DKDYFSSPDP VDDDNNSNSG SFSSEQSLLT NEFVEPVDDF AELEWVSQFV DDSSCSELSL  120
LYPNYVERTR SEPDGKPVSN KTSTNPTTTT SPCFPLRVPS KARTKRTRRS GWAWSSGSPL  180
STESTISSSS STSCLIFTDS VQNIEWFSGF DEPVAKKLKK KPAVQSGGGL FQRRCSHCQT  240
QKTPQWRTGP LGPKTLCNAC GVRYKSGRLF PEYRPACSPT FSVDMHSNSH RKVLEMRRKK  300
ESAGPDVGLS HMVQSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006487363.10.0GATA transcription factor 5-like
TrEMBLA0A067DEU90.0A0A067DEU9_CITSI; GATA transcription factor
STRINGXP_006487363.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57392647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-49GATA transcription factor 5