PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g021188m | ||||||||
Common Name | CISIN_1g021188mg, LOC102622211 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB | ||||||||
Protein Properties | Length: 317aa MW: 36126.2 Da PI: 5.6762 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.8 | 3e-19 | 28 | 75 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd ll ++++q+G g+W+ +a++ g++Rt+k+c++rw++yl orange1.1g021188m 28 RGPWTLEEDTLLTHYIHQHGEGRWNMVAKCAGLKRTGKSCRLRWLNYL 75 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 49.9 | 7.3e-16 | 81 | 124 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T++E+ l+++++ ++G++ W++Ia++++ gRt++++k++w++ orange1.1g021188m 81 RGNLTPQEQFLILELHSKWGNR-WSKIAQCLP-GRTDNEIKNYWRT 124 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 23.201 | 23 | 79 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.03E-31 | 25 | 122 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.1E-16 | 27 | 77 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-17 | 28 | 75 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.5E-24 | 29 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.61E-12 | 30 | 75 | No hit | No description |
PROSITE profile | PS51294 | 18.15 | 80 | 130 | IPR017930 | Myb domain |
SMART | SM00717 | 2.7E-14 | 80 | 128 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.0E-14 | 81 | 124 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-22 | 83 | 129 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.08E-11 | 85 | 124 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009686 | Biological Process | gibberellin biosynthetic process | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MHTMRAARAA GTKRECNSSE EDQQELRRGP WTLEEDTLLT HYIHQHGEGR WNMVAKCAGL 60 KRTGKSCRLR WLNYLKPDIK RGNLTPQEQF LILELHSKWG NRWSKIAQCL PGRTDNEIKN 120 YWRTRVQKQA RQLNIESNSE TFFEAVRCYW MPRLLQKMEQ NSASPNTLLT NSSAQSSNFS 180 IIPSVSSSTL SPLPSTILYN SNQTINENSS SETSPNFFPG DFSKISQLQQ PGITQQPTSP 240 HAYGNNVCSN QIVPNDSYYV DCCGFDMEGY SLTDPIAEMS SYDISSSECQ MAEADWMSND 300 MSDALWSMDD IWQLRE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 1e-25 | 25 | 129 | 1 | 104 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaves and flowers. {ECO:0000269|PubMed:19529828}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription repressor of phosphate (Pi) starvation-induced genes. Regulates negatively Pi starvation responses via the repression of gibberellic acid (GA) biosynthesis and signaling. Modulates root architecture, phosphatase activity, and Pi uptake and accumulation. {ECO:0000269|PubMed:19529828}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00216 | DAP | Transfer from AT1G68320 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Slightly induced by salicylic acid (PubMed:16463103). Induced reversibly in response to phosphate (Pi) deficiency but repressed in the presence of Pi, specifically in the leaves. Availability of Pi increases with decreased levels (PubMed:19529828). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:19529828}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006468714.1 | 0.0 | transcription factor MYB62 | ||||
Swissprot | Q9C9G7 | 8e-95 | MYB62_ARATH; Transcription factor MYB62 | ||||
TrEMBL | A0A067GE79 | 0.0 | A0A067GE79_CITSI; Uncharacterized protein | ||||
STRING | XP_006468714.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2632 | 25 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68320.1 | 9e-92 | myb domain protein 62 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g021188m |
Entrez Gene | 102622211 |
Publications ? help Back to Top | |||
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