PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g021090m | ||||||||
Common Name | CISIN_1g021090mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C2H2 | ||||||||
Protein Properties | Length: 318aa MW: 35025.3 Da PI: 7.8153 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13 | 0.00031 | 4 | 26 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C++sFs+ L H++ H orange1.1g021090m 4 HKCKLCTRSFSNGRALGGHMKAH 26 79******************998 PP | |||||||
2 | zf-C2H2 | 11.1 | 0.0012 | 209 | 231 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+k F++ + L H +++ orange1.1g021090m 209 YRCEKCKKAFRSYHALGGHKKVC 231 9************9999998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.22E-5 | 3 | 31 | No hit | No description |
Pfam | PF13912 | 1.2E-6 | 4 | 28 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.044 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.074 | 4 | 31 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 6.4E-6 | 209 | 229 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.66E-7 | 209 | 270 | No hit | No description |
PROSITE profile | PS50157 | 9.64 | 209 | 241 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 31 | 209 | 229 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.8E-11 | 248 | 270 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.598 | 248 | 270 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.2 | 248 | 270 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 250 | 270 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MEKHKCKLCT RSFSNGRALG GHMKAHLAAH PLPPKTNQQQ QPSDSTESAS TSSSSSGEGV 60 EVKGKSPEVA EEKSLGYGLR NNPKKSFRFA DPEFSFAVDS GSVVVQDRES ETESRNPTRR 120 RSKRNRKLFT AHQDHHQKRM LKKPNFLESP AEPEPVSSVS DTSPEEDVAM CLMMLSRDVW 180 MRNNDEAQDH KIVEMVEESE EIKLTRGKYR CEKCKKAFRS YHALGGHKKV CETNINAGTK 240 VAADEKIFEC PFCYKVFGSG QALGGHKRSH LLANSSSTAA AAAVVATDPA VKFENNLIDL 300 NLPAPLEEDD FSVVSDA* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00416 | DAP | Transfer from AT3G60580 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006440308.1 | 0.0 | zinc finger protein ZAT1 | ||||
TrEMBL | A0A067FDZ7 | 0.0 | A0A067FDZ7_CITSI; Uncharacterized protein | ||||
STRING | XP_006440308.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1465 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 1e-34 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g021090m |