PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g021063m | ||||||||
Common Name | CISIN_1g021063mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C2H2 | ||||||||
Protein Properties | Length: 319aa MW: 34194.5 Da PI: 7.9167 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.3 | 0.00052 | 132 | 154 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++sF++ L H +H orange1.1g021063m 132 YECKTCNRSFPSFQALGGHRASH 154 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 13.2 | 0.00028 | 227 | 249 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H orange1.1g021063m 227 HECSICGSEFTSGQALGGHMRRH 249 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.3E-13 | 131 | 156 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.35E-9 | 131 | 154 | No hit | No description |
PROSITE profile | PS50157 | 10.72 | 132 | 159 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.06 | 132 | 154 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 134 | 154 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 4.35E-9 | 222 | 249 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 5.2E-4 | 223 | 249 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 2.1E-11 | 227 | 251 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.019 | 227 | 249 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.827 | 227 | 254 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 229 | 249 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MIMGSSSNDH QNNQIVKGKR TKRQRSTSPF GFAVTDSSSS GNNSGADESY YSNNNNNNSV 60 MSFPTTSGES TEEEDQDMAN CLIMLAQGDD RSRQINQENI IDDKVQKFNA SRKFTTAVTS 120 NNKAGAGGFY VYECKTCNRS FPSFQALGGH RASHKKPKAA LAEAPEKKSS ASVPALAVLP 180 TKNEYKDSYS TLHHHDQSHM QAASAAATAA NNNNTANNNN KGGNKIHECS ICGSEFTSGQ 240 ALGGHMRRHR AAVATGNNIN QVATIESNIG DVKPVAATRS ILPLDLNLPA PEDDHHIRFG 300 ATQQSLVFSA PALVDCHY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006424440.1 | 0.0 | zinc finger protein ZAT5 | ||||
TrEMBL | A0A067EYX5 | 0.0 | A0A067EYX5_CITSI; Uncharacterized protein | ||||
TrEMBL | V4SFV4 | 0.0 | V4SFV4_9ROSI; Uncharacterized protein | ||||
STRING | XP_006424440.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5862 | 27 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28200.1 | 2e-56 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g021063m |