PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g021011m | ||||||||
Common Name | CISIN_1g018659mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | WRKY | ||||||||
Protein Properties | Length: 319aa MW: 35625.3 Da PI: 10.5549 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.2 | 2.6e-31 | 252 | 309 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ e+p+++++tYegeHnh+ orange1.1g021011m 252 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPTMLIVTYEGEHNHP 309 99***********************9988****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 6.7E-18 | 203 | 248 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 2.2E-33 | 238 | 310 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.953 | 245 | 311 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.32E-27 | 248 | 310 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.6E-38 | 250 | 310 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.7E-27 | 252 | 309 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MVETGEAVFR FKKVVSLLNN GSGHARVRKL RKLPNPVNQS IFLENPHHKT EIPSKNLQFL 60 QSSFHDNPVQ EMGSLAKSSL TLGNPSLELI SNGKQHLQLG QQTPSTSAHY HFLQQQQLQQ 120 RLLHQQQQQQ QHHMKLQAEK MFRKSNSGVS LNFDSSSCTP TMSSNRSFIS SLSMDGSVAN 180 LDGSAFHLIG APRSSDQSSQ QHKRKCSGRG EDGSVKCGSN GRCHCSKKRK HRVKKSIKVP 240 AISNKLADIP PDDYSWRKYG QKPIKGSPHP RGYYKCSSMR GCPARKHVER CLEEPTMLIV 300 TYEGEHNHPR LPSQSATT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-20 | 243 | 312 | 7 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.10326 | 0.0 | callus |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00284 | DAP | Transfer from AT2G30590 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006479579.1 | 0.0 | probable WRKY transcription factor 21 | ||||
Refseq | XP_024045169.1 | 0.0 | probable WRKY transcription factor 21 | ||||
Refseq | XP_024045170.1 | 0.0 | probable WRKY transcription factor 21 | ||||
Refseq | XP_024954695.1 | 0.0 | probable WRKY transcription factor 21 | ||||
Swissprot | O04336 | 1e-114 | WRK21_ARATH; Probable WRKY transcription factor 21 | ||||
TrEMBL | A0A067FM75 | 0.0 | A0A067FM75_CITSI; Uncharacterized protein | ||||
STRING | XP_006479579.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006443899.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30590.1 | 5e-85 | WRKY DNA-binding protein 21 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g021011m |