PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g020997m
Common NameCISIN_1g020997mg, LOC102630711
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 319aa    MW: 35334.2 Da    PI: 6.3519
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g020997mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.63.9e-151462148
                       TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                       +g+W++eEd +l++++++ G+g +W + +++ g+ R++k+c++rw++yl
  orange1.1g020997m 14 KGPWSPEEDAKLKEYIEKNGTGgNWIALPHKAGLMRCGKSCRLRWLNYL 62
                       79*********************************************97 PP

2Myb_DNA-binding41.23.8e-1369111246
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        g ++ +Ed ++  +++  G++ W+tIa+ ++ gRt++++k++w++
  orange1.1g020997m  69 GEFSDDEDRIICSLFASIGSR-WSTIAAQLP-GRTDNDIKNYWNT 111
                        789******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.75962IPR017930Myb domain
SuperFamilySSF466894.69E-2611109IPR009057Homeodomain-like
SMARTSM007171.1E-101364IPR001005SANT/Myb domain
PfamPF002491.8E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-231569IPR009057Homeodomain-like
CDDcd001673.77E-81662No hitNo description
PROSITE profilePS5129421.2963117IPR017930Myb domain
SMARTSM007171.4E-1167115IPR001005SANT/Myb domain
PfamPF002492.1E-1169111IPR001005SANT/Myb domain
CDDcd001671.02E-770113No hitNo description
Gene3DG3DSA:1.10.10.604.7E-2370117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKEYIE KNGTGGNWIA LPHKAGLMRC GKSCRLRWLN  60
YLRPNINHGE FSDDEDRIIC SLFASIGSRW STIAAQLPGR TDNDIKNYWN TKLKKKLIGI  120
VNQQSQIKTH QAAVSSFSSL FQTSSSSSSS SSPSPSPTIS YNCNDINAYY TTTARSFTGL  180
ERNSSFSNSL LLSSNSCITA QHQVKEKIFM FGGDQASFSS SDGSCSNQQI SHGKEFDYEY  240
YGGRNNKCEQ MGLQNNLFYN GVEGDNKFMI SNVETPLDYG LEEIKQLISS SSSSCNNFLF  300
DENKTEESLV LLNDADCE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006491666.10.0transcription factor RAX2
RefseqXP_024038144.10.0transcription factor RAX2
TrEMBLA0A067D5F80.0A0A067D5F8_CITSI; Uncharacterized protein
TrEMBLA0A2H5QXX40.0A0A2H5QXX4_CITUN; Uncharacterized protein
STRINGXP_006491666.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.12e-75MYB family protein