PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g020997m | ||||||||
Common Name | CISIN_1g020997mg, LOC102630711 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB | ||||||||
Protein Properties | Length: 319aa MW: 35334.2 Da PI: 6.3519 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.6 | 3.9e-15 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l++++++ G+g +W + +++ g+ R++k+c++rw++yl orange1.1g020997m 14 KGPWSPEEDAKLKEYIEKNGTGgNWIALPHKAGLMRCGKSCRLRWLNYL 62 79*********************************************97 PP | |||||||
2 | Myb_DNA-binding | 41.2 | 3.8e-13 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++ +Ed ++ +++ G++ W+tIa+ ++ gRt++++k++w++ orange1.1g020997m 69 GEFSDDEDRIICSLFASIGSR-WSTIAAQLP-GRTDNDIKNYWNT 111 789******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.75 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.69E-26 | 11 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-10 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.77E-8 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 21.29 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-11 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.1E-11 | 69 | 111 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.02E-7 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.7E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 319 aa Download sequence Send to blast |
MGRAPCCDKA NVKKGPWSPE EDAKLKEYIE KNGTGGNWIA LPHKAGLMRC GKSCRLRWLN 60 YLRPNINHGE FSDDEDRIIC SLFASIGSRW STIAAQLPGR TDNDIKNYWN TKLKKKLIGI 120 VNQQSQIKTH QAAVSSFSSL FQTSSSSSSS SSPSPSPTIS YNCNDINAYY TTTARSFTGL 180 ERNSSFSNSL LLSSNSCITA QHQVKEKIFM FGGDQASFSS SDGSCSNQQI SHGKEFDYEY 240 YGGRNNKCEQ MGLQNNLFYN GVEGDNKFMI SNVETPLDYG LEEIKQLISS SSSSCNNFLF 300 DENKTEESLV LLNDADCE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-25 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006491666.1 | 0.0 | transcription factor RAX2 | ||||
Refseq | XP_024038144.1 | 0.0 | transcription factor RAX2 | ||||
TrEMBL | A0A067D5F8 | 0.0 | A0A067D5F8_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5QXX4 | 0.0 | A0A2H5QXX4_CITUN; Uncharacterized protein | ||||
STRING | XP_006491666.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36890.1 | 2e-75 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g020997m |
Entrez Gene | 102630711 |