PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g020996m
Common NameCISIN_1g020996mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family GATA
Protein Properties Length: 319aa    MW: 34845 Da    PI: 7.7529
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g020996mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA534.6e-17244278135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        Cs+C +  Tp+WR gp g+ktLCnaCG++y++ +l
  orange1.1g020996m 244 CSHCLSQRTPQWRAGPLGPKTLCNACGVRYKSGRL 278
                        *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.108.8E-14237275IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.334238274IPR000679Zinc finger, GATA-type
SMARTSM004014.1E-15238292IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-15239301No hitNo description
CDDcd002024.44E-12243290No hitNo description
PfamPF003206.0E-15244278IPR000679Zinc finger, GATA-type
PROSITE patternPS003440244269IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDFCRNVAVS GDQYQQDQVL SPSSIPPSSS SNLALADPLD DLFPAHTTEV DVSLEWLSIF  60
VEDCLSSSGI CLPASELPTK NNAAATTAAP SPKPLQQQQQ QKASTTTTPS PPPSLEKFVV  120
PGKARSKRKR ASSTAKLTQT STSLSSLTTG CWTTTHNNHP ADTQLFHSDD PPLLQVQQAF  180
WLADSQLIFP KKETTNTNTI NTNSNKKAKA NDGDEEEEAK EEETEIGKEV EVVQQQQQQQ  240
GRRCSHCLSQ RTPQWRAGPL GPKTLCNACG VRYKSGRLLP EYRPAKSPTF VSYLHSNSHK  300
KVLEMRMALM PSPSSLPK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.106130.0flower| fruit| seed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443395.11e-166GATA transcription factor 5
RefseqXP_006479088.11e-166GATA transcription factor 5-like
TrEMBLA0A067EJ070.0A0A067EJ07_CITSI; Uncharacterized protein
STRINGXP_006479088.11e-165(Citrus sinensis)
STRINGXP_006443395.11e-165(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17095911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.12e-34GATA transcription factor 1