PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g020814m

Common Name

CISIN_1g019960mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 322aa MW: 36910.7 Da PI: 6.7862

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g020814m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	49.7	6.5e-16	46	95	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lre++P++ ++K + a+ L +++eY+++Lq orange1.1g020814m 46 RSKHSVTEQRRRSKINERFQILREIIPHS----DQKRDTASFLLEVIEYVQYLQ 95 899***********************9....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.542	44	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.63E-18	45	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.8E-22	45	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.42E-14	46	99	No hit	No description
Pfam	PF00010	2.8E-13	46	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-11	50	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MRTTKGNREE EDYEDDEFMS KKEAASNITN SNAKDGKNSD KASVIRSKHS VTEQRRRSKI 60 NERFQILREI IPHSDQKRDT ASFLLEVIEY VQYLQEKVQK YEVSYQDWSA EPTKLMPWRN 120 SHWRVQNFAT QPHAIKNGSG PGSMFPGKFD DNSISMSPTM LTSTQTPVES DPNRDIACKP 180 MDRQPEVANK GISISMPLQG NLPAPARSDS VLLHPLQRPV SDAQSNECPA TTDTMNQQEE 240 LTVEGGTINI SSIYSQGCIL KHLKIFFYLF QFKNIDCLNF CKYMVHQLHV DYYHLQKGDP 300 SLCWIFTEIL YLRLNLLLLS Y*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.10633	0.0	fruit

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Functional Description ? help Back to Top
Source	Description
UniProt	Positive brassinosteroid-signaling protein.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00219	DAP	Transfer from AT1G69010	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by heat treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006484262.1	0.0	transcription factor BIM2 isoform X1
Refseq	XP_015387335.1	0.0	transcription factor BIM2 isoform X3
Swissprot	Q9CAA4	1e-99	BIM2_ARATH; Transcription factor BIM2
TrEMBL	A0A067FVV5	0.0	A0A067FVV5_CITSI; Uncharacterized protein
STRING	XP_006484262.1	0.0	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	1e-102	BES1-interacting Myc-like protein 2

Link Out ? help Back to Top
Phytozome	orange1.1g020814m

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]