PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g020651m
Common NameCISIN_1g011805mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family G2-like
Protein Properties Length: 324aa    MW: 35341.3 Da    PI: 6.7445
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g020651mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like110.49.1e-35258312155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kpr+rWtpeLHe+Fveav+qLGGse+AtPk +l+lmkv+gLt++hvkSHLQkYR+
  orange1.1g020651m 258 KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 312
                        79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.061255315IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.0E-32256314IPR009057Homeodomain-like
SuperFamilySSF466892.15E-18256312IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-25258312IPR006447Myb domain, plants
PfamPF002492.6E-10260311IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0016036Biological Processcellular response to phosphate starvation
GO:0055063Biological Processsulfate ion homeostasis
GO:0071486Biological Processcellular response to high light intensity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEARPLSIQR SSARQLNNLG VSGPMSSSLS VLPTPLEDTY SKLPNSQQVY MEQELRTRPL  60
APAPHIPANS GVVGHIFSSS SGLSSDLQYS SASPHEKLPR TTSFISQSST PIPQTSHSGL  120
PQSSTSSHYT KESSSSWCPE SLPGYVDFAA NTPVQNSQME GSSCSGAIVS EEFSKRNDWH  180
EWADQLITDD DPLGSSWNEI LADTSMTEME PKMSYQVPKT PTSMPAHRTQ VHQQLPASST  240
EIRTVVTPSA SANNAPAKPR MRWTPELHEA FVEAVNQLGG SERATPKGVL KLMKVEGLTI  300
YHVKSHLQKY RTARYRPDSS EGM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-32257316160Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-32257316160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-32257316160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-32257316160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-32257316160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-32257316160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-32257316160Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-32257316160Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443756.10.0protein PHOSPHATE STARVATION RESPONSE 1 isoform X1
RefseqXP_006443759.10.0protein PHOSPHATE STARVATION RESPONSE 1 isoform X1
RefseqXP_006443760.10.0protein PHOSPHATE STARVATION RESPONSE 1 isoform X1
RefseqXP_015386209.10.0protein PHOSPHATE STARVATION RESPONSE 1
RefseqXP_024043818.10.0protein PHOSPHATE STARVATION RESPONSE 1 isoform X1
TrEMBLA0A067EZ440.0A0A067EZ44_CITSI; Uncharacterized protein
TrEMBLA0A067F2M70.0A0A067F2M7_CITSI; Uncharacterized protein
STRINGXP_006479465.10.0(Citrus sinensis)
STRINGXP_006443756.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.11e-66phosphate starvation response 1