PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g020604m
Common NameCISIN_1g013552mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family G2-like
Protein Properties Length: 325aa    MW: 36256.9 Da    PI: 6.9454
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g020604mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like33.59.2e-111233355
            G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55
                       ++lm+++gLtl+h+kSHLQkYRl
  orange1.1g020604m  1 MKLMGIPGLTLYHLKSHLQKYRL 23
                       79********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-9124IPR009057Homeodomain-like
PfamPF143799.9E-2470116IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MKLMGIPGLT LYHLKSHLQK YRLSKNLHGQ ANIGNNKIGP VTVPGERMPE ANATHMNNLS  60
IGPQPNKSLH ISETIQMQIE VQRRLHEQLE VQRHLQLRIE AQGKYLQAVL EKAQETLGRQ  120
NLGTAGLEAA KVQLSELVSK VSTQCLNSTF SDLKELQGFC PQQPQANQPT DCSMDSCLTS  180
CEGSQKDQEI HNGGVRLRPY HGTPTLEPKE IVEEPMLQQT ELKWRKDLKE SKFLSSIGKD  240
RGPGELSIGS GSFPAGRFKA SNEDEHFQDQ TNKKPEGAKL ENENLLPEYR LPCFSTKLDL  300
NAHDHENDVA SGCKQFDLNG FSWN*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in phloem and/or cambium. {ECO:0000269|PubMed:15923329}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00331DAPTransfer from AT3G04030Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443380.10.0myb-related protein 2
RefseqXP_006479082.10.0myb-related protein 2
RefseqXP_006479083.10.0myb-related protein 2
RefseqXP_024044798.10.0myb-related protein 2
SwissprotQ9SQQ91e-115PHL9_ARATH; Myb-related protein 2
TrEMBLA0A067EJ300.0A0A067EJ30_CITSI; Uncharacterized protein
STRINGXP_006479082.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.21e-117G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K
    NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis.
    Plant Sci., 2017. 263: p. 219-225
    [PMID:28818378]