PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g020391m | ||||||||
Common Name | CISIN_1g020391mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 327aa MW: 36371.5 Da PI: 4.5968 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.9 | 1.4e-19 | 50 | 99 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++a +++++g orange1.1g020391m 50 QYRGIRQRP-WGKWAAEIRDPTK---GVRVWLGTFNTAEEAARAYDAEARRIRG 99 69*******.**********964...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-32 | 50 | 109 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.0E-37 | 50 | 113 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.947 | 50 | 107 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.36E-34 | 50 | 108 | No hit | No description |
SuperFamily | SSF54171 | 1.9E-22 | 50 | 109 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.6E-12 | 51 | 99 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.8E-12 | 51 | 62 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.8E-12 | 73 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070483 | Biological Process | detection of hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 327 aa Download sequence Send to blast |
MKFASLYDLV VLLVYEITFF FLFSPIIEGS TAVKHVEQAK KSTERKRKNQ YRGIRQRPWG 60 KWAAEIRDPT KGVRVWLGTF NTAEEAARAY DAEARRIRGK KAKVNFPDET PAAAPKSSVK 120 ANSQKSVPKA CLSPVQPSLN QNFNYLNNSD QDYYNNVSIL EEKPQVNQYG YMGSFPDDGE 180 LGFKPFVPTA DDTPVYFNSD QGSNSFDCSD FGWGEQAPKT PEISSVLEAT PEVDESQFVD 240 AVANPMKKLK SNSENAVPVQ DNNGKSLSDE LLAFDNQVKF LPMPYPEGSW EASLDAFLNG 300 DNTQDGGNLM NLWSFDDFPS TLGGVY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-22 | 50 | 107 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.4686 | 0.0 | callus| flower| fruit| root| seed| stem| vegetative meristem |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00204 | DAP | Transfer from AT1G53910 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006426780.1 | 0.0 | ethylene-responsive transcription factor RAP2-12 isoform X1 | ||||
Refseq | XP_024036019.1 | 0.0 | ethylene-responsive transcription factor RAP2-12 isoform X1 | ||||
TrEMBL | A0A067E3E0 | 0.0 | A0A067E3E0_CITSI; Uncharacterized protein | ||||
STRING | XP_006426779.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G14230.3 | 3e-60 | related to AP2 2 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g020391m |