PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g020383m
Common NameCISIN_1g020318mg, LOC102622318
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family BES1
Protein Properties Length: 328aa    MW: 35292.2 Da    PI: 7.9118
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g020383mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822211.42.4e-6521471150
             DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasaspes 92 
                        ++++r+ptwkEr+nnkrRERrRRaiaakiyaGLR++Gny+lpk++DnneVlkALc+eAGw+ve+DGttyrkg+kp e ++++g sasas +s
  orange1.1g020383m   2 TSGTRMPTWKERDNNKRRERRRRAIAAKIYAGLRMYGNYRLPKHCDNNEVLKALCNEAGWTVEEDGTTYRKGCKPVEYMDVMGGSASASACS 93 
                        5899**************************************************************************************** PP

             DUF822  93 slqsslkssalaspvesysaspksssfpspssldsislasa....asllpvlsvlslvsssl 150
                        s+q        +sp++sy++sp sssfpsp s+  +++a+     +sl+p+l++ls++sss+
  orange1.1g020383m  94 SYQ--------QSPCASYNPSPGSSSFPSPRSSHYTPHANGsadaNSLIPWLKNLSSSSSSA 147
                        ***........*********************9999988768888**********9987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056875.6E-663141IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MTSGTRMPTW KERDNNKRRE RRRRAIAAKI YAGLRMYGNY RLPKHCDNNE VLKALCNEAG  60
WTVEEDGTTY RKGCKPVEYM DVMGGSASAS ACSSYQQSPC ASYNPSPGSS SFPSPRSSHY  120
TPHANGSADA NSLIPWLKNL SSSSSSASSK DPHHMYIHGG SISAPVTPPL SSPTCRTPRT  180
KNDWDEPTAV AAWAGQHYPF LPSSTPPSPG RQVLPDSGWL SGIQIPQSGP SSPTFSLVSR  240
NPFGFREEVL SGGPSRMWTP GQSGTCSPAV PAGVDNTSDV PMSDCIATEF AFGCNATGLV  300
KPWEGERIHE ECVSDDLELT LGNSKTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A4e-24677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B4e-24677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C4e-24677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D4e-24677372443Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.145290.0flower
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449559.10.0BES1/BZR1 homolog protein 4 isoform X1
RefseqXP_006467592.10.0BES1/BZR1 homolog protein 4 isoform X1
RefseqXP_006467593.10.0BES1/BZR1 homolog protein 4 isoform X2
RefseqXP_024047538.10.0BES1/BZR1 homolog protein 4 isoform X1
RefseqXP_024047539.10.0BES1/BZR1 homolog protein 4 isoform X2
SwissprotQ9ZV881e-136BEH4_ARATH; BES1/BZR1 homolog protein 4
TrEMBLA0A067GE960.0A0A067GE96_CITSI; Uncharacterized protein
TrEMBLA0A2H5N3J60.0A0A2H5N3J6_CITUN; Uncharacterized protein
TrEMBLV4W9570.0V4W957_9ROSI; Uncharacterized protein
STRINGXP_006467592.10.0(Citrus sinensis)
STRINGXP_006449559.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.11e-113BES1/BZR1 homolog 4