PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g020332m

Common Name

CISIN_1g015261mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 328aa MW: 37527.4 Da PI: 5.0839

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g020332m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.9	1.7e-05	67	91	1	23
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 y+C+ Cgk ++++ L +H+++ H orange1.1g020332m 67 YSCGLCGKGYRSSKALAQHLNSrsH 91 99******************98666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00451	0.0099	1	35	IPR003604	Zinc finger, U1-type
SuperFamily	SSF57667	6.62E-6	3	36	No hit	No description
SMART	SM00355	45	4	28	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	6	28	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.868	67	96	IPR007087	Zinc finger, C2H2
Pfam	PF12171	7.7E-5	67	91	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00451	24	67	98	IPR003604	Zinc finger, U1-type
SuperFamily	SSF57667	6.77E-6	67	98	No hit	No description
Gene3D	G3DSA:3.30.160.60	6.1E-4	67	94	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.12	67	91	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	69	91	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.06E-7	170	230	No hit	No description
Pfam	PF12756	1.1E-25	185	285	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	21	234	261	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MPGLTCNSCN REFNDDAEQK LHYKSDWHRY NLKRKVAGVP GVTEALFLAR QAALAQEKNK 60 NATPMTYSCG LCGKGYRSSK ALAQHLNSRS HIMRASQGTS NEEKEKVIIK PIPLRDVNKP 120 PRKREANNEE SEDSDDEWEE VGPDEVLVSE ATNSLTNLNV GSPADDDLEE DDDDGAFEEF 180 DPACCFMCDL PHDAIENCMV HMHKCHGFFI PDVEYLKDPK GLLTYLGLKV KRDFMCLYCN 240 DRCHPFNSLE AVRKHMEAKR HCKIHFGDGD DEEEAELEEF YDYSSRSLSS KFIFLFCFLF 300 PNLIYLLFNK IIKFFVLTVT WMRMGNS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6qik_z	4e-20	4	284	6	282	Cytoplasmic 60S subunit biogenesis factor REH1
6qt0_z	4e-20	4	284	6	282	Cytoplasmic 60S subunit biogenesis factor REH1
6qtz_z	4e-20	4	284	6	282	Cytoplasmic 60S subunit biogenesis factor REH1
6ri5_z	4e-20	4	284	6	282	Cytoplasmic 60S subunit biogenesis factor REH1
6s05_z	4e-20	4	284	6	282	Cytoplasmic 60S subunit biogenesis factor REH1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Pre-60S-associated factor involved in the cytoplasmic maturation of the 60S subunit. Involved in the dissociation and recycling of other late pre-60S factors before newly synthesized large ribosomal subunits enter translation (By similarity). Can complement the growth defect of a yeast mutant lacking REI1 (PubMed:24038679). Required for leaf growth under cold temperature conditions (PubMed:24038679). {ECO:0000250\|UniProtKB:P38344, ECO:0000269\|PubMed:24038679}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006450152.1	0.0	cytoplasmic 60S subunit biogenesis factor REI1 homolog 1
Refseq	XP_006483574.1	0.0	cytoplasmic 60S subunit biogenesis factor REI1 homolog 1
Swissprot	Q8H1G5	1e-121	REIL1_ARATH; Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1
TrEMBL	A0A067FIV5	0.0	A0A067FIV5_CITSI; Uncharacterized protein
STRING	XP_006483574.1	0.0	(Citrus sinensis)
STRING	XP_006450152.1	0.0	(Citrus clementina)

Link Out ? help Back to Top
Phytozome	orange1.1g020332m

Publications ? help Back to Top
Schmidt S,Dethloff F,Beine-Golovchuk O,Kopka J The REIL1 and REIL2 proteins of Arabidopsis thaliana are required for leaf growth in the cold. Plant Physiol., 2013. 163(4): p. 1623-39 [PMID:24038679] Beine-Golovchuk O, et al. Plant Temperature Acclimation and Growth Rely on Cytosolic Ribosome Biogenesis Factor Homologs. Plant Physiol., 2018. 176(3): p. 2251-2276 [PMID:29382692]