PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g020303m
Common NameCISIN_1g020303mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family G2-like
Protein Properties Length: 329aa    MW: 36898.9 Da    PI: 7.5854
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g020303mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.66e-331972255
            G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       prlrWtpeLH++Fv+a+++LGG++kAtPk +l+lm+vkgLt++hvkSHLQ+YR+
  orange1.1g020303m 19 PRLRWTPELHRCFVHAIDRLGGHQKATPKLVLQLMDVKGLTISHVKSHLQMYRS 72
                       8****************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.9651575IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.7E-321576IPR009057Homeodomain-like
SuperFamilySSF466896.99E-161774IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-231972IPR006447Myb domain, plants
PfamPF002493.3E-82071IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGSCGRSGAV RQYIRSKVPR LRWTPELHRC FVHAIDRLGG HQKATPKLVL QLMDVKGLTI  60
SHVKSHLQMY RSMRSDLGRQ DKTQQRRQSS SEQHDRGCCI DEVNDLNHNH HMGFHDYPSS  120
ESIKKSDAQC IYNNINTPFL PSKSKARTET RGCSISDQNL QCSQGICETV SNPYPFDDYL  180
QQKQNNKAKE GYGTGAAFRY KQAHSNALSS PFSQPHDDDH LYTLKYAVAV EESDYILKVN  240
KNDSDELIHM HQNNVLRGQA EDEEADDFEL SLGLSLPHPS SQRSNASSTS DIGAEAISLY  300
SRSNAKDCFG SSRRYNINLD LSIALCGT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-192074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-192074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-192074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-192074357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006420714.20.0two-component response regulator ARR12
TrEMBLA0A067ERQ00.0A0A067ERQ0_CITSI; Uncharacterized protein
STRINGXP_006470870.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14600.15e-37G2-like family protein