PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g020293m
Common NameCISIN_1g015403mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family G2-like
Protein Properties Length: 329aa    MW: 36878.7 Da    PI: 7.7507
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g020293mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.85.9e-29264314151
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                        k+r++W+peLH+rFv+a++qLGGs++AtPk+i+elm+v+gLt+++vkSHLQ
  orange1.1g020293m 264 KQRRCWSPELHRRFVSALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQ 314
                        79************************************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.79E-13261315IPR009057Homeodomain-like
PROSITE profilePS5129412.287261321IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-24262314IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-23264315IPR006447Myb domain, plants
PfamPF002493.1E-6266314IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGSVPPELSL DFRPTNFVPK TITDFLREVS LIGNVSEKLS KLDSFLKGLE DELRKIDAFK  60
RELPLCMLLL NDAILVLKEE SMQCARASKK VQPVLEEFIP LKNNNSEDDD EDARPIKKEK  120
DSSKDNKKNW MSSVQLWNTD YNHPTNDPIF DSKQNLNLKI KRNEEENPFQ ACKSRAGAVA  180
GAGAGATAFL PFKTCPVFPR KDDKEELPVH GLSLVTPGMK NPREDTGSTG SRTSCSKSVS  240
SSAPNVQSNL RTGPQPPQQQ TNRKQRRCWS PELHRRFVSA LQQLGGSQVA TPKQIRELMQ  300
VDGLTNDEVK SHLQVSYCSS ILFDYWEE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.166481e-118callus
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1475978e-50EF147597.1 Populus trichocarpa clone WS0123_L02 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423074.10.0transcription factor HHO2
TrEMBLA0A067ED820.0A0A067ED82_CITSI; Uncharacterized protein
TrEMBLV4RPI80.0V4RPI8_9ROSI; Uncharacterized protein
STRINGXP_006423074.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-45G2-like family protein