PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g020267m

Common Name

CISIN_1g020124mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

G2-like

Protein Properties

Length: 329aa MW: 35772 Da PI: 7.0193

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g020267m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.8	5.7e-34	49	103	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl orange1.1g020267m 49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.485	46	106	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-32	48	104	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.42E-18	48	103	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-25	49	104	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-9	51	102	IPR001005	SANT/Myb domain
Pfam	PF14379	1.0E-18	135	179	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MYQPNSVPSS SLVRSNSLVH GQHLDCGSSQ MDPMNGGNSL NNNPSLASKQ RLRWTHELHE 60 RFVDAVAQLG GPDRATPKGV LRVMGVQGLT IYHVKSHLQK YRLAKYLPDS SSDGKKVDKK 120 ETGDMLSSLD GSSGMQITEA LKLQMEVQKR LHEQLERQLQ LRIEAQGKYL KKIIEEQQRL 180 SGVLTEAPGS GGSAPASGDN CQEPDKKTDP ATPAPTSESP LQDKAAKEHV PAKSLSLDES 240 FSSQNEPLTP DSGCNVSSPS QSPKGERSMK KQRVDMETAY AKPEMVLTHP ILESSISSSY 300 QQPQNVFDPS SRASVGKEDR PEVSGNDL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-23	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-23	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-23	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-23	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.3882	0.0	flower\| fruit\| root

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006467243.1	0.0	myb family transcription factor PHL7 isoform X1
Refseq	XP_024951354.1	0.0	myb family transcription factor PHL7 isoform X1
Swissprot	Q9SJW0	1e-135	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A067GIW4	0.0	A0A067GIW4_CITSI; Uncharacterized protein
STRING	XP_006467243.1	0.0	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	1e-98	G2-like family protein

Link Out ? help Back to Top
Phytozome	orange1.1g020267m