PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g020210m | ||||||||
Common Name | CISIN_1g020210mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 330aa MW: 36410.7 Da PI: 5.9276 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36 | 1.3e-11 | 129 | 179 | 1 | 54 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a++ ++++k+L orange1.1g020210m 129 QRMTHIAVERNRRKQMNEYLAILRSLMPPS---YVQRGDQASVIGGSINFVKEL 179 79***************************9...899999999999999998888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.55E-12 | 127 | 184 | No hit | No description |
PROSITE profile | PS50888 | 14.78 | 128 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.02E-15 | 128 | 193 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.4E-9 | 129 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-12 | 129 | 195 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.2E-9 | 134 | 185 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MALEAVVYPK PQDPFGYSCN KDIYSSPGEG GGAWGYDFCF QQEDRTLLGI IDANIIEQGL 60 HANWDSSSSP TIMQHANESW GPNSSPDAYA ADQTLSAGSF SPAAAATTGG RRKRRRTKSS 120 KNKEEIENQR MTHIAVERNR RKQMNEYLAI LRSLMPPSYV QRGDQASVIG GSINFVKELE 180 QLLQSMEAQK RNTSQLLKAG DNGVSSPFAN FFTFPQYSTR SSQSNNLAPD HESSMTENVA 240 DIEVNMAESH ANIKILTKKR PRQLLKMVAS FQNLRLSVLH LNVSTVDQMV LYSVSVKVEE 300 GSQLNTVDEI AAAVHQILLE IEEEATAFS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 115 | RKRRR |
2 | 111 | 116 | RKRRRT |
3 | 129 | 140 | RMTHIAVERNRR |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006433906.1 | 0.0 | transcription factor bHLH96 | ||||
Swissprot | Q9C7T4 | 1e-93 | BH096_ARATH; Transcription factor bHLH96 | ||||
TrEMBL | A0A067GQU9 | 0.0 | A0A067GQU9_CITSI; Uncharacterized protein | ||||
STRING | XP_006433906.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1116 | 27 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 2e-92 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g020210m |
Publications ? help Back to Top | |||
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