PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g020197m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 330aa    MW: 36941.9 Da    PI: 10.2577
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g020197mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.28.1e-18110157148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        +g+WT eEd +l++++  +G g+W++ ar+ g++Rt+k+c++rw++yl
  orange1.1g020197m 110 KGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYL 157
                        79********************************************97 PP
2Myb_DNA-binding45.61.6e-14165206346
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        + T eE++l+++++ ++G++ W++ a++++ gRt++++k++w++
  orange1.1g020197m 165 KITLEEQLLILELHSRWGNR-WSKLAQHLP-GRTDNEIKNYWRT 206
                        6799****************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.357105157IPR017930Myb domain
SuperFamilySSF466897.99E-30107204IPR009057Homeodomain-like
SMARTSM007172.0E-15109159IPR001005SANT/Myb domain
PfamPF002499.4E-16110157IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-21111164IPR009057Homeodomain-like
CDDcd001676.58E-12112157No hitNo description
PROSITE profilePS5129421.026158212IPR017930Myb domain
SMARTSM007173.3E-12162210IPR001005SANT/Myb domain
PfamPF002492.5E-13164206IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.3E-21165211IPR009057Homeodomain-like
CDDcd001672.84E-6183206No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MYGFARFHKI FSANLLYAAS KTYPSNLETT AAANSNVGTG RLGSSICCSH GYLPNPLLEF  60
YPRRTRVTQF VHLRQPKLKK TEVKGRACRA NRNFKSSSTT ISEEDLDMRK GPWTVEEDFK  120
LINYIVTHGE GRWNRLARCA GLKRTGKSCR LRWLNYLRPD VRLGKITLEE QLLILELHSR  180
WGNRWSKLAQ HLPGRTDNEI KNYWRTRVQK QAKQLKCDVN SKQFKDTVRY LWMPRLIERI  240
QANKSSPVAT TPELDSAAPA GTATPIATTA ATAGSFTTAP IDEPASRFIN DIDGGTGQMV  300
MQPLDCSSTT QSESESSSKS TTQSESGSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-2410721224128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426324.20.0transcription factor JAMYB
TrEMBLA0A067F3P00.0A0A067F3P0_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006466563.11e-180(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.11e-83myb domain protein 78