PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g020172m
Common NameCISIN_1g020172mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 331aa    MW: 36593.5 Da    PI: 7.7298
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g020172mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.84.1e-08233273954
                        HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         r+RR+ri +++  L++l+P        K++ a++L +A +Y+k L
  orange1.1g020172m 233 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 273
                        69******************95.....5****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.332224273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-14229283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.6E-13230279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-12232282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-5233273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.71E-4246278No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MADQSQVANK AVGVSTTTCS LESLDCLLSA TNSNSAETSA EDDDGISILF SSDCRNLWNF  60
GSNSSAVSSG ESENNAPNNF ARNNNGPVNN ELDHETISHC SSVQYVNNGR IVHQEELRPG  120
STKRKNIDDH QSEQFHLFQG GGFKLISENP PKAKKPRLDK RPSSANINFQ LQASNNSSVS  180
SSIEEPDPEA IAHMKEMIYR AAAFRPVNLG LEVVEKPKRK NVRISTDPQT VAARQRRERI  240
SERIRVLQRL VPGGSKMDTA SMLDEAANYL KFLRSQVKAL ENPGHQKPDH HHSMNYPPTN  300
LAFSSLPFNN NSFPVQTHFS LQNPNHIHRP *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233238RQRRER
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006466558.20.0transcription factor bHLH87
SwissprotQ8S3D25e-89BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A067EU850.0A0A067EU85_CITSI; Uncharacterized protein
STRINGXP_006466558.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79602641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.14e-62bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]