PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g020172m | ||||||||
Common Name | CISIN_1g020172mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 331aa MW: 36593.5 Da PI: 7.7298 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 24.8 | 4.1e-08 | 233 | 273 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P K++ a++L +A +Y+k L orange1.1g020172m 233 ARQRRERISERIRVLQRLVPGG-----SKMDTASMLDEAANYLKFL 273 69******************95.....5****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.332 | 224 | 273 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.5E-14 | 229 | 283 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.6E-13 | 230 | 279 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.4E-12 | 232 | 282 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.2E-5 | 233 | 273 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.71E-4 | 246 | 278 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 331 aa Download sequence Send to blast |
MADQSQVANK AVGVSTTTCS LESLDCLLSA TNSNSAETSA EDDDGISILF SSDCRNLWNF 60 GSNSSAVSSG ESENNAPNNF ARNNNGPVNN ELDHETISHC SSVQYVNNGR IVHQEELRPG 120 STKRKNIDDH QSEQFHLFQG GGFKLISENP PKAKKPRLDK RPSSANINFQ LQASNNSSVS 180 SSIEEPDPEA IAHMKEMIYR AAAFRPVNLG LEVVEKPKRK NVRISTDPQT VAARQRRERI 240 SERIRVLQRL VPGGSKMDTA SMLDEAANYL KFLRSQVKAL ENPGHQKPDH HHSMNYPPTN 300 LAFSSLPFNN NSFPVQTHFS LQNPNHIHRP * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 233 | 238 | RQRRER |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Flowers. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006466558.2 | 0.0 | transcription factor bHLH87 | ||||
Swissprot | Q8S3D2 | 5e-89 | BH087_ARATH; Transcription factor bHLH87 | ||||
TrEMBL | A0A067EU85 | 0.0 | A0A067EU85_CITSI; Uncharacterized protein | ||||
STRING | XP_006466558.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7960 | 26 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21330.1 | 4e-62 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g020172m |
Publications ? help Back to Top | |||
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