PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g020077m

Common Name

CISIN_1g016585mg, LOC102624045

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

G2-like

Protein Properties

Length: 332aa MW: 36219.7 Da PI: 8.7048

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g020077m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.9	4.2e-32	161	216	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r+ W+peLH+rF++a++qLGGs+ AtPk+i+elm+v+gLt+++vkSHLQkYRl+ orange1.1g020077m 161 KQRRSWSPELHRRFLHALQQLGGSHAATPKQIRELMNVDGLTNDEVKSHLQKYRLH 216 79****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.438	158	218	IPR017930	Myb domain
SuperFamily	SSF46689	1.54E-18	159	219	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	7.9E-29	159	219	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	7.5E-27	161	216	IPR006447	Myb domain, plants
Pfam	PF00249	3.1E-8	163	214	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MHVQSECSEQ TSSDGPILEE FIPIKRSSSH DDNDNDNDDR HSNRPTTTNN NREKEKNSDK 60 KKSDWLRSVQ LWNQSPDPQP KEEEVVPRKA TVVEVKRNGS GGAFQPFHRE KCGEKKDQQQ 120 RLGKVNTPVP TAAASSTTDT AVGKGEKNDK DKDKEGQPQR KQRRSWSPEL HRRFLHALQQ 180 LGGSHAATPK QIRELMNVDG LTNDEVKSHL QKYRLHTRRP SPAMHNGGNP QAPQFVVVGG 240 IWVQAPDYAA VAAKAPGEAG SIATSNGIYA PVAAPPPAVP QSSASVVQIS QQTQSEHLQS 300 EERGSHSDGG HHANSPATSS STHTTTTSPV F*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-12	161	214	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-12	161	214	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	8e-13	161	214	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-13	161	214	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-13	161	214	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-13	161	214	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-12	161	214	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-12	161	214	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-12	161	214	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-12	161	214	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-12	161	214	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-12	161	214	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in phosphate signaling in roots. {ECO:0000250\|UniProtKB:Q9FX67}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00160	DAP	Transfer from AT1G25550	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006484416.1	0.0	transcription factor HHO3
Swissprot	Q9FPE8	2e-81	HHO3_ARATH; Transcription factor HHO3
TrEMBL	A0A067G303	0.0	A0A067G303_CITSI; Uncharacterized protein
TrEMBL	A0A2H5P3T6	0.0	A0A2H5P3T6_CITUN; Uncharacterized protein
STRING	XP_006484416.1	0.0	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25550.1	5e-61	G2-like family protein

Link Out ? help Back to Top
Phytozome	orange1.1g020077m
Entrez Gene	102624045

Publications ? help Back to Top
Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis. Plant Cell Physiol., 2016. 57(6): p. 1142-52 [PMID:27016098]