PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g020075m
Common NameCISIN_1g020075mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 332aa    MW: 37234.9 Da    PI: 5.8192
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g020075mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.43.3e-07127148223
                        EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                         C +Cgk F+r  nL+ H+r H
  orange1.1g020075m 127 FCDICGKGFKRDANLRMHMRAH 148
                        6*******************99 PP
2zf-C2H212.10.0006211234123
                        EEETTTT.EEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                        y+C +C+ ksFs  s+L++H +++
  orange1.1g020075m 211 YSCDKCHkKSFSVVSDLRSHYKNC 234
                        99*******************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.02E-6123149No hitNo description
PROSITE profilePS5015712.217126153IPR007087Zinc finger, C2H2
SMARTSM003550.0017126148IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280128148IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.4E-6128151IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035534173206IPR015880Zinc finger, C2H2-like
SMARTSM0035566211232IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MSNLDESRPI RPEYPVQYTD PRIPLTNLSA VRTRMESLQQ FLLESINSNT LISQHQMNVV  60
SSEIASAIHQ VIVNGSALLA CSPQQPTLQQ LPPDPKNPEI GSEHDIESDC EIVEIDAVEL  120
LAEHIHFCDI CGKGFKRDAN LRMHMRAHGD EFKTPQALAK PEKGSVSGRK TRFSCPYDGC  180
NRNKKHKKFR ALKSVICVKN HFKRSHCPKM YSCDKCHKKS FSVVSDLRSH YKNCGESRWK  240
CSCGTSFSRK DKLFGHVALF EGHMPEVEVD EKMKHHDQDV VVVGDDDDDD EMVDDIDDDG  300
LSSFEGLLDL DGFGSFDDFC LQDVLGDGGF S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006428216.10.0zinc finger protein STOP1 homolog
RefseqXP_006464195.10.0zinc finger protein STOP1 homolog
TrEMBLA0A067DX780.0A0A067DX78_CITSI; Uncharacterized protein
STRINGXP_006464195.10.0(Citrus sinensis)
STRINGXP_006428216.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16077813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.34e-77C2H2 family protein