PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g019954m
Common NameCISIN_1g019954mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 334aa    MW: 37737.7 Da    PI: 4.5319
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g019954mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.92e-1996149356
                        --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        k++++t +q++ Le+ Fe ++++  e++ +LAk lgL+ rqV +WFqNrRa++k
  orange1.1g019954m  96 KKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWK 149
                        56689************************************************9 PP
2HD-ZIP_I/II128.33.1e-4195186192
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                        ekkrrl+ +qv++LE+sFe e+kLeperK +la++Lglqprqva+WFqnrRAR+ktkqlEkdy++L+++y++lk++ ++L ke+e+L++e+ 
  orange1.1g019954m  95 EKKRRLTVDQVQFLEKSFEVENKLEPERKIQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYDVLQNSYNSLKADYDNLFKEKEKLKAEVL 186
                        69**************************************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.57E-1985153IPR009057Homeodomain-like
PROSITE profilePS5007117.39491151IPR001356Homeobox domain
SMARTSM003891.5E-1994155IPR001356Homeobox domain
PfamPF000469.2E-1796149IPR001356Homeobox domain
CDDcd000861.38E-1796152No hitNo description
Gene3DG3DSA:1.10.10.607.7E-2098159IPR009057Homeodomain-like
PRINTSPR000311.4E-5122131IPR000047Helix-turn-helix motif
PROSITE patternPS000270126149IPR017970Homeobox, conserved site
PRINTSPR000311.4E-5131147IPR000047Helix-turn-helix motif
PfamPF021832.4E-16151193IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MAGGRMYNQN SSSGGGTSSL SFLIQSQKGS CSNSQNLDAS FLSGPSPSPF LGPRSMVSFE  60
DVHLANGSNN RPFFRPFDRD ENGDEDFDEY FHQPEKKRRL TVDQVQFLEK SFEVENKLEP  120
ERKIQLAKDL GLQPRQVAIW FQNRRARWKT KQLEKDYDVL QNSYNSLKAD YDNLFKEKEK  180
LKAEVLKLTD KLQVKEKESK NTELPVVNKQ EPPQISEPVA DSAASEGKVC KASVVACKQE  240
DISSAKSDIF DSDSPNYTDG VHSSLLETCD SSYVFEPEQS DLSQDEDDSL SKNVLLPPYV  300
FPKLEETEYS DPPTNSCNFG FPIEDHAFWS WSF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143151RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.43130.0callus| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR4920820.0KR492082.1 UNVERIFIED: Citrus sinensis clone 170-1k mRNA sequence.
GenBankKR4921500.0KR492150.1 UNVERIFIED: Citrus maxima clone 170-1 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006476659.10.0homeobox-leucine zipper protein HAT5
TrEMBLA0A067G8Q00.0A0A067G8Q0_CITSI; Uncharacterized protein
STRINGXP_006476659.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM54528143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.14e-45homeobox 1