PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g019930m | ||||||||
Common Name | CISIN_1g019898mg, LOC102615089 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | TCP | ||||||||
Protein Properties | Length: 335aa MW: 36343.9 Da PI: 7.0631 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 117.6 | 1.5e-36 | 22 | 138 | 2 | 108 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssasec.....eaessss 80 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak +i++l+++ ++++ + + +ss+ orange1.1g019930m 22 TGRKDRHSKVYTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSSIDKLAELppwqpstsNNNA---AteaepNMGSSEM 110 79**************************************************************988864432222...2223444445555 PP TCP 81 sasnsssgkaaksaakskksqksaasal 108 + +++s+++ +++ +++ +++a++ + orange1.1g019930m 111 AIQEQSESSGYSFQIHRQLGDHNANNDS 138 5555555544444444444444444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.1E-32 | 22 | 127 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.561 | 24 | 82 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MGMKGTEGEI VQVEGGHIVR STGRKDRHSK VYTSKGPRDR RVRLSAHTAI QFYDVQDRLG 60 YDRPSKAVDW LIKKAKSSID KLAELPPWQP STSNNNAATE AEPNMGSSEM AIQEQSESSG 120 YSFQIHRQLG DHNANNDSTF MSPPPLDTDA IADTIKSFFP TSTTASAINF QNYPAGILTR 180 STNPTEDLGL SLHTAFQDPG LIHGQSRGNA SHTASADQTP FAGSAPVGFD SSFQRMLAWN 240 NETSAETRGT GGFLFNSSSL SQQAALAFRG PLQSSFTQSV RAWDDIPVGK THEMQQSSVF 300 GMPAGFNIPA RIHGEDHHQH SNRPSSSSPN NSHR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 2e-22 | 29 | 82 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 2e-22 | 29 | 82 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in cotyledons during embryogenesis. Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:25378179}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, buds, flowers and immature siliques. {ECO:0000269|PubMed:17307931}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006469046.1 | 0.0 | transcription factor TCP4 | ||||
Refseq | XP_006469047.1 | 0.0 | transcription factor TCP4 | ||||
Refseq | XP_015382794.1 | 0.0 | transcription factor TCP4 | ||||
Swissprot | Q8LPR5 | 3e-76 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A067E4G4 | 0.0 | A0A067E4G4_CITSI; Uncharacterized protein | ||||
STRING | XP_006469046.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 9e-74 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g019930m |
Entrez Gene | 102615089 |